Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VIMP08670 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VIMP08670 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC16.49■□□□□ 0.23
VIMP08670 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.48■□□□□ 0.23
VIMP08670 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.48■□□□□ 0.23
VIMP08670 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
VIMP08670 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
VIMP08670 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
VIMP08670 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
VIMP08670 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.48■□□□□ 0.23
VIMP08670 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
VIMP08670 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.48■□□□□ 0.23
VIMP08670 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.48■□□□□ 0.23
VIMP08670 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.48■□□□□ 0.23
VIMP08670 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.48■□□□□ 0.23
VIMP08670 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
VIMP08670 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.48■□□□□ 0.23
VIMP08670 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VIMP08670 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 AC139749.1-202ENST00000617529 3139 ntBASIC16.48■□□□□ 0.23
VIMP08670 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.48■□□□□ 0.23
VIMP08670 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
VIMP08670 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.48■□□□□ 0.23
VIMP08670 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC16.48■□□□□ 0.23
VIMP08670 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
VIMP08670 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VIMP08670 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.47■□□□□ 0.23
VIMP08670 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
VIMP08670 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.47■□□□□ 0.23
VIMP08670 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.47■□□□□ 0.23
VIMP08670 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.47■□□□□ 0.23
VIMP08670 ATP5G1P1-201ENST00000448724 379 ntBASIC16.47■□□□□ 0.23
VIMP08670 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.47■□□□□ 0.23
VIMP08670 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
VIMP08670 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC16.47■□□□□ 0.23
VIMP08670 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
VIMP08670 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VIMP08670 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
VIMP08670 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
VIMP08670 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.47■□□□□ 0.23
VIMP08670 ST20-AS1-201ENST00000560255 4223 ntBASIC16.46■□□□□ 0.23
VIMP08670 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
VIMP08670 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
VIMP08670 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.46■□□□□ 0.23
VIMP08670 KRT8P39-201ENST00000396270 1433 ntBASIC16.46■□□□□ 0.23
VIMP08670 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.46■□□□□ 0.23
VIMP08670 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
VIMP08670 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
VIMP08670 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.46■□□□□ 0.23
VIMP08670 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
VIMP08670 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.46■□□□□ 0.23
VIMP08670 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms