Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.87■□□□□ 0.13
LDLRP01130 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LDLRP01130 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
LDLRP01130 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LDLRP01130 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LDLRP01130 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LDLRP01130 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
LDLRP01130 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.86■□□□□ 0.13
LDLRP01130 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.86■□□□□ 0.13
LDLRP01130 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
LDLRP01130 AL596087.1-201ENST00000400979 1969 ntBASIC15.86■□□□□ 0.13
LDLRP01130 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
LDLRP01130 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
LDLRP01130 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.86■□□□□ 0.13
LDLRP01130 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
LDLRP01130 KRT18P27-201ENST00000427733 1299 ntBASIC15.86■□□□□ 0.13
LDLRP01130 AC103564.2-201ENST00000432853 1299 ntBASIC15.86■□□□□ 0.13
LDLRP01130 AC122714.2-201ENST00000502787 707 ntBASIC15.86■□□□□ 0.13
LDLRP01130 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.86■□□□□ 0.13
LDLRP01130 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.86■□□□□ 0.13
LDLRP01130 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC15.86■□□□□ 0.13
LDLRP01130 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.86■□□□□ 0.13
LDLRP01130 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
LDLRP01130 AC106028.4-201ENST00000614509 607 ntBASIC15.86■□□□□ 0.13
LDLRP01130 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.86■□□□□ 0.13
LDLRP01130 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.86■□□□□ 0.13
LDLRP01130 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
LDLRP01130 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.86■□□□□ 0.13
LDLRP01130 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.86■□□□□ 0.13
LDLRP01130 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
LDLRP01130 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.86■□□□□ 0.13
LDLRP01130 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LDLRP01130 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC15.86■□□□□ 0.13
LDLRP01130 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LDLRP01130 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
LDLRP01130 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.86■□□□□ 0.13
LDLRP01130 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LDLRP01130 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.85■□□□□ 0.13
LDLRP01130 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC15.85■□□□□ 0.13
LDLRP01130 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.85■□□□□ 0.13
LDLRP01130 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.85■□□□□ 0.13
LDLRP01130 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
LDLRP01130 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
LDLRP01130 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.85■□□□□ 0.13
LDLRP01130 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.85■□□□□ 0.13
LDLRP01130 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 COX20P2-201ENST00000452636 358 ntBASIC15.85■□□□□ 0.13
LDLRP01130 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.85■□□□□ 0.13
LDLRP01130 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.85■□□□□ 0.13
LDLRP01130 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
LDLRP01130 AC006557.2-201ENST00000592985 1240 ntBASIC15.85■□□□□ 0.13
LDLRP01130 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.85■□□□□ 0.13
LDLRP01130 C20orf181-201ENST00000623918 480 ntBASIC15.85■□□□□ 0.13
LDLRP01130 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
LDLRP01130 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
LDLRP01130 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.85■□□□□ 0.13
LDLRP01130 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
LDLRP01130 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.85■□□□□ 0.13
LDLRP01130 AC144831.1-201ENST00000573312 2656 ntBASIC15.85■□□□□ 0.13
LDLRP01130 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDLRP01130 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
LDLRP01130 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.85■□□□□ 0.13
LDLRP01130 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
LDLRP01130 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.85■□□□□ 0.13
LDLRP01130 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
LDLRP01130 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.84■□□□□ 0.13
LDLRP01130 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms