Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.47■□□□□ 0.23
TRIM38O00635 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.47■□□□□ 0.23
TRIM38O00635 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM38O00635 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
TRIM38O00635 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.47■□□□□ 0.23
TRIM38O00635 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.47■□□□□ 0.23
TRIM38O00635 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.47■□□□□ 0.23
TRIM38O00635 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM38O00635 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM38O00635 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
TRIM38O00635 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM38O00635 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
TRIM38O00635 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM38O00635 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM38O00635 AL513477.1-201ENST00000602865 2407 ntBASIC16.46■□□□□ 0.23
TRIM38O00635 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM38O00635 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 MIR943-201ENST00000401286 94 ntBASIC16.46■□□□□ 0.23
TRIM38O00635 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 PMS2P4-201ENST00000412466 1052 ntBASIC16.46■□□□□ 0.23
TRIM38O00635 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM38O00635 INGX-202ENST00000489074 768 ntBASIC16.46■□□□□ 0.23
TRIM38O00635 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
TRIM38O00635 IGHV3-62-201ENST00000520057 340 ntBASIC16.46■□□□□ 0.23
TRIM38O00635 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
TRIM38O00635 AC239800.4-201ENST00000603712 296 ntBASIC16.46■□□□□ 0.23
TRIM38O00635 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
TRIM38O00635 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM38O00635 AC092364.2-201ENST00000596710 2692 ntBASIC16.46■□□□□ 0.23
TRIM38O00635 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
TRIM38O00635 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM38O00635 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM38O00635 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM38O00635 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM38O00635 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM38O00635 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM38O00635 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM38O00635 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM38O00635 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 UXT-AS1-201ENST00000590504 1525 ntBASIC16.45■□□□□ 0.22
TRIM38O00635 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRIM38O00635 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
TRIM38O00635 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
TRIM38O00635 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRIM38O00635 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.45■□□□□ 0.22
TRIM38O00635 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.45■□□□□ 0.22
TRIM38O00635 KLF2P3-201ENST00000451977 1087 ntBASIC16.45■□□□□ 0.22
TRIM38O00635 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
TRIM38O00635 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.45■□□□□ 0.22
TRIM38O00635 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.45■□□□□ 0.22
TRIM38O00635 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.45■□□□□ 0.22
TRIM38O00635 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.45■□□□□ 0.22
TRIM38O00635 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.45■□□□□ 0.22
TRIM38O00635 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
TRIM38O00635 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
TRIM38O00635 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM38O00635 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM38O00635 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM38O00635 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms