Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 GOLGA2P4-201ENST00000441462 777 ntBASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 LETM1P2-201ENST00000597330 2178 ntBASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SHROOM4Q9ULL8 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 AC005052.1-201ENST00000625181 2492 ntBASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 PCGF3-213ENST00000620529 1899 ntBASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 IMPDH1P4-201ENST00000445028 1534 ntBASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
SHROOM4Q9ULL8 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 CTBP2P5-201ENST00000454986 1264 ntBASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 EMC4-209ENST00000559421 497 ntTSL 2 BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC30.7■■■□□ 2.5
SHROOM4Q9ULL8 GGT3P-204ENST00000453783 1664 ntBASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 ZNF767P-206ENST00000513792 565 ntBASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 BTNL10-201ENST00000595971 695 ntBASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 AC020765.3-201ENST00000613051 740 ntBASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SHROOM4Q9ULL8 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SHROOM4Q9ULL8 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms