Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CPNE4Q96A23 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
CPNE4Q96A23 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CPNE4Q96A23 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
CPNE4Q96A23 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
CPNE4Q96A23 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CPNE4Q96A23 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CPNE4Q96A23 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CPNE4Q96A23 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 AL118508.1-201ENST00000613502 2345 ntBASIC14.7□□□□□ -0.06
CPNE4Q96A23 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 U82695.1-201ENST00000635752 1889 ntBASIC14.7□□□□□ -0.06
CPNE4Q96A23 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 TSEN15P1-201ENST00000423257 515 ntBASIC14.7□□□□□ -0.06
CPNE4Q96A23 AC142381.1-201ENST00000426099 345 ntBASIC14.7□□□□□ -0.06
CPNE4Q96A23 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.7□□□□□ -0.06
CPNE4Q96A23 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CPNE4Q96A23 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 AC092183.1-201ENST00000469884 875 ntBASIC14.69□□□□□ -0.06
CPNE4Q96A23 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 AC098859.1-201ENST00000502915 1238 ntBASIC14.69□□□□□ -0.06
CPNE4Q96A23 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 SLC25A39P2-201ENST00000537614 270 ntBASIC14.69□□□□□ -0.06
CPNE4Q96A23 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 AC093520.2-201ENST00000561830 333 ntBASIC14.69□□□□□ -0.06
CPNE4Q96A23 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 SPTSSB-204ENST00000617024 1292 ntBASIC14.69□□□□□ -0.06
CPNE4Q96A23 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.69□□□□□ -0.06
CPNE4Q96A23 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CPNE4Q96A23 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms