Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTP4A1Q93096 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTP4A1Q93096 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PTP4A1Q93096 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTP4A1Q93096 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTP4A1Q93096 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTP4A1Q93096 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
PTP4A1Q93096 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PTP4A1Q93096 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.73□□□□□ -0.05
PTP4A1Q93096 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTP4A1Q93096 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.73□□□□□ -0.05
PTP4A1Q93096 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
PTP4A1Q93096 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
PTP4A1Q93096 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.73□□□□□ -0.05
PTP4A1Q93096 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
PTP4A1Q93096 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 AC012569.1-201ENST00000591191 1524 ntBASIC14.72□□□□□ -0.05
PTP4A1Q93096 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 AC013268.4-201ENST00000637413 2228 ntBASIC14.72□□□□□ -0.05
PTP4A1Q93096 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 DPM2-202ENST00000373110 738 ntTSL 2 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 AL031284.1-201ENST00000419297 478 ntBASIC14.72□□□□□ -0.05
PTP4A1Q93096 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 AC148477.8-201ENST00000624298 468 ntBASIC14.72□□□□□ -0.05
PTP4A1Q93096 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTP4A1Q93096 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
PTP4A1Q93096 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 ETFA-208ENST00000559602 792 ntTSL 3 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 OR7E47P-204ENST00000575924 449 ntBASIC14.71□□□□□ -0.05
PTP4A1Q93096 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 PRKN-208ENST00000610470 531 ntTSL 2 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 PRKN-209ENST00000612485 225 ntTSL 5 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 FAM215A-202ENST00000632077 792 ntBASIC14.71□□□□□ -0.05
PTP4A1Q93096 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTP4A1Q93096 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.71□□□□□ -0.05
PTP4A1Q93096 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
PTP4A1Q93096 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.71□□□□□ -0.06
PTP4A1Q93096 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.71□□□□□ -0.06
PTP4A1Q93096 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms