Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 ASL-204ENST00000395331 1538 ntTSL 5 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 ABHD17AP1-201ENST00000358206 933 ntBASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 AC098590.1-201ENST00000468126 897 ntBASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 B3GAT3P1-201ENST00000471720 806 ntBASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 MIR3180-5-201ENST00000583743 153 ntBASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 AC093525.9-201ENST00000624961 1746 ntBASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC28AQ8IWP9 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CCDC28AQ8IWP9 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms