Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LDB1Q86U70 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
LDB1Q86U70 AL365203.3-201ENST00000609742 2057 ntBASIC16.33■□□□□ 0.21
LDB1Q86U70 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LDB1Q86U70 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
LDB1Q86U70 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
LDB1Q86U70 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
LDB1Q86U70 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.33■□□□□ 0.2
LDB1Q86U70 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.33■□□□□ 0.2
LDB1Q86U70 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.33■□□□□ 0.2
LDB1Q86U70 PGAM5P1-201ENST00000518923 814 ntBASIC16.33■□□□□ 0.2
LDB1Q86U70 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
LDB1Q86U70 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.33■□□□□ 0.2
LDB1Q86U70 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.33■□□□□ 0.2
LDB1Q86U70 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.33■□□□□ 0.2
LDB1Q86U70 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
LDB1Q86U70 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
LDB1Q86U70 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.33■□□□□ 0.2
LDB1Q86U70 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
LDB1Q86U70 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.33■□□□□ 0.2
LDB1Q86U70 AC073439.1-201ENST00000624121 1774 ntBASIC16.33■□□□□ 0.2
LDB1Q86U70 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
LDB1Q86U70 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
LDB1Q86U70 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.33■□□□□ 0.2
LDB1Q86U70 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB1Q86U70 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.32■□□□□ 0.2
LDB1Q86U70 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LDB1Q86U70 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB1Q86U70 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LDB1Q86U70 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB1Q86U70 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB1Q86U70 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 AC093724.1-201ENST00000448659 1027 ntBASIC16.32■□□□□ 0.2
LDB1Q86U70 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB1Q86U70 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.32■□□□□ 0.2
LDB1Q86U70 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.32■□□□□ 0.2
LDB1Q86U70 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB1Q86U70 KRT18P58-201ENST00000527480 1120 ntBASIC16.32■□□□□ 0.2
LDB1Q86U70 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB1Q86U70 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LDB1Q86U70 AL138918.1-201ENST00000568306 659 ntBASIC16.32■□□□□ 0.2
LDB1Q86U70 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB1Q86U70 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB1Q86U70 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB1Q86U70 AC091812.2-201ENST00000619081 385 ntBASIC16.32■□□□□ 0.2
LDB1Q86U70 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.32■□□□□ 0.2
LDB1Q86U70 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.32■□□□□ 0.2
LDB1Q86U70 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
LDB1Q86U70 PRAL-201ENST00000624952 3286 ntBASIC16.32■□□□□ 0.2
LDB1Q86U70 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.32■□□□□ 0.2
LDB1Q86U70 AC046158.3-201ENST00000624947 2558 ntBASIC16.32■□□□□ 0.2
LDB1Q86U70 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB1Q86U70 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB1Q86U70 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB1Q86U70 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB1Q86U70 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB1Q86U70 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 WASH6P-202ENST00000359512 1437 ntBASIC16.31■□□□□ 0.2
LDB1Q86U70 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
LDB1Q86U70 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
LDB1Q86U70 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.31■□□□□ 0.2
LDB1Q86U70 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms