Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
KRT39Q6A163 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
KRT39Q6A163 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.42
KRT39Q6A163 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
KRT39Q6A163 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
KRT39Q6A163 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.64■□□□□ 0.42
KRT39Q6A163 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
KRT39Q6A163 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
KRT39Q6A163 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
KRT39Q6A163 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
KRT39Q6A163 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.64■□□□□ 0.41
KRT39Q6A163 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
KRT39Q6A163 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.64■□□□□ 0.41
KRT39Q6A163 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
KRT39Q6A163 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
KRT39Q6A163 MIR346-201ENST00000362234 95 ntBASIC17.64■□□□□ 0.41
KRT39Q6A163 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.64■□□□□ 0.41
KRT39Q6A163 UPF3AP3-201ENST00000420996 769 ntBASIC17.64■□□□□ 0.41
KRT39Q6A163 AC142381.1-201ENST00000426099 345 ntBASIC17.64■□□□□ 0.41
KRT39Q6A163 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.64■□□□□ 0.41
KRT39Q6A163 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
KRT39Q6A163 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.64■□□□□ 0.41
KRT39Q6A163 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.64■□□□□ 0.41
KRT39Q6A163 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.64■□□□□ 0.41
KRT39Q6A163 IGHV3-62-201ENST00000520057 340 ntBASIC17.64■□□□□ 0.41
KRT39Q6A163 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.64■□□□□ 0.41
KRT39Q6A163 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
KRT39Q6A163 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
KRT39Q6A163 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.64■□□□□ 0.41
KRT39Q6A163 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.64■□□□□ 0.41
KRT39Q6A163 SPTSSB-204ENST00000617024 1292 ntBASIC17.64■□□□□ 0.41
KRT39Q6A163 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
KRT39Q6A163 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.64■□□□□ 0.41
KRT39Q6A163 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
KRT39Q6A163 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
KRT39Q6A163 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
KRT39Q6A163 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
KRT39Q6A163 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
KRT39Q6A163 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.63■□□□□ 0.41
KRT39Q6A163 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
KRT39Q6A163 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 MIR648-201ENST00000385046 94 ntBASIC17.63■□□□□ 0.41
KRT39Q6A163 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.63■□□□□ 0.41
KRT39Q6A163 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.63■□□□□ 0.41
KRT39Q6A163 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.63■□□□□ 0.41
KRT39Q6A163 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.63■□□□□ 0.41
KRT39Q6A163 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.63■□□□□ 0.41
KRT39Q6A163 AP000842.3-202ENST00000569238 1080 ntBASIC17.63■□□□□ 0.41
KRT39Q6A163 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.63■□□□□ 0.41
KRT39Q6A163 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.63■□□□□ 0.41
KRT39Q6A163 AC105339.1-204ENST00000636249 355 ntBASIC17.63■□□□□ 0.41
KRT39Q6A163 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
KRT39Q6A163 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
KRT39Q6A163 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.63■□□□□ 0.41
KRT39Q6A163 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.63■□□□□ 0.41
KRT39Q6A163 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
KRT39Q6A163 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.63■□□□□ 0.41
KRT39Q6A163 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
KRT39Q6A163 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.63■□□□□ 0.41
KRT39Q6A163 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
KRT39Q6A163 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.62■□□□□ 0.41
KRT39Q6A163 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.62■□□□□ 0.41
KRT39Q6A163 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
KRT39Q6A163 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.62■□□□□ 0.41
KRT39Q6A163 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.62■□□□□ 0.41
KRT39Q6A163 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.62■□□□□ 0.41
KRT39Q6A163 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.62■□□□□ 0.41
KRT39Q6A163 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.62■□□□□ 0.41
KRT39Q6A163 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.62■□□□□ 0.41
KRT39Q6A163 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.62■□□□□ 0.41
KRT39Q6A163 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.62■□□□□ 0.41
KRT39Q6A163 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.62■□□□□ 0.41
KRT39Q6A163 AC092865.5-201ENST00000545435 363 ntBASIC17.62■□□□□ 0.41
KRT39Q6A163 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms