Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 YBX1P6-201ENST00000442962 1002 ntBASIC20.27■□□□□ 0.84
RC3H1Q5TC82 AC093433.1-201ENST00000458048 571 ntBASIC20.27■□□□□ 0.84
RC3H1Q5TC82 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 HADH-212ENST00000638621 741 ntTSL 5 BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.27■□□□□ 0.84
RC3H1Q5TC82 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RC3H1Q5TC82 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC20.27■□□□□ 0.83
RC3H1Q5TC82 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC20.27■□□□□ 0.83
RC3H1Q5TC82 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 MIR1247-201ENST00000408206 136 ntBASIC20.26■□□□□ 0.83
RC3H1Q5TC82 GPAA1P2-201ENST00000417923 928 ntBASIC20.26■□□□□ 0.83
RC3H1Q5TC82 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 AC099548.2-209ENST00000480264 625 ntBASIC20.26■□□□□ 0.83
RC3H1Q5TC82 TPI1-206ENST00000488464 791 ntTSL 5 BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 ZNF767P-206ENST00000513792 565 ntBASIC20.26■□□□□ 0.83
RC3H1Q5TC82 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 MIR3615-201ENST00000581999 87 ntBASIC20.26■□□□□ 0.83
RC3H1Q5TC82 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 AC005252.2-201ENST00000624630 1141 ntBASIC20.26■□□□□ 0.83
RC3H1Q5TC82 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 AC134312.5-201ENST00000568031 1313 ntBASIC20.26■□□□□ 0.83
RC3H1Q5TC82 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RC3H1Q5TC82 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 AC068880.1-201ENST00000507289 2297 ntBASIC20.25■□□□□ 0.83
RC3H1Q5TC82 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 AC026954.1-201ENST00000429771 1293 ntBASIC20.25■□□□□ 0.83
RC3H1Q5TC82 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 DERL2-202ENST00000570848 657 ntTSL 5 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 AC010328.2-201ENST00000597698 1111 ntBASIC20.25■□□□□ 0.83
RC3H1Q5TC82 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 RHOXF1P1-202ENST00000635473 501 ntBASIC20.25■□□□□ 0.83
RC3H1Q5TC82 AC008687.7-202ENST00000637404 953 ntBASIC20.25■□□□□ 0.83
RC3H1Q5TC82 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
RC3H1Q5TC82 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms