Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC074386.1-202ENST00000463561 864 ntBASIC15.91■□□□□ 0.14
HNF4AP41235 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.91■□□□□ 0.14
HNF4AP41235 PDPK2P-202ENST00000562415 1191 ntBASIC15.91■□□□□ 0.14
HNF4AP41235 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.91■□□□□ 0.14
HNF4AP41235 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.91■□□□□ 0.14
HNF4AP41235 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.91■□□□□ 0.14
HNF4AP41235 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.91■□□□□ 0.14
HNF4AP41235 AL009183.1-201ENST00000603760 355 ntBASIC15.91■□□□□ 0.14
HNF4AP41235 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
HNF4AP41235 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
HNF4AP41235 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
HNF4AP41235 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.91■□□□□ 0.14
HNF4AP41235 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
HNF4AP41235 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
HNF4AP41235 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.91■□□□□ 0.14
HNF4AP41235 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.91■□□□□ 0.14
HNF4AP41235 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HNF4AP41235 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.91■□□□□ 0.14
HNF4AP41235 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.9■□□□□ 0.14
HNF4AP41235 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.9■□□□□ 0.14
HNF4AP41235 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
HNF4AP41235 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.9■□□□□ 0.14
HNF4AP41235 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.9■□□□□ 0.14
HNF4AP41235 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.9■□□□□ 0.14
HNF4AP41235 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.9■□□□□ 0.14
HNF4AP41235 AC140658.5-201ENST00000438532 169 ntBASIC15.9■□□□□ 0.14
HNF4AP41235 PGAM5P1-201ENST00000518923 814 ntBASIC15.9■□□□□ 0.14
HNF4AP41235 AC040169.1-201ENST00000565382 521 ntBASIC15.9■□□□□ 0.14
HNF4AP41235 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
HNF4AP41235 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.9■□□□□ 0.14
HNF4AP41235 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.9■□□□□ 0.14
HNF4AP41235 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HNF4AP41235 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
HNF4AP41235 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 REXO1L8P-201ENST00000604378 1897 ntBASIC15.9■□□□□ 0.14
HNF4AP41235 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.9■□□□□ 0.14
HNF4AP41235 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HNF4AP41235 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
HNF4AP41235 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HNF4AP41235 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HNF4AP41235 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.89■□□□□ 0.13
HNF4AP41235 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.89■□□□□ 0.13
HNF4AP41235 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.89■□□□□ 0.13
HNF4AP41235 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.89■□□□□ 0.13
HNF4AP41235 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
HNF4AP41235 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
HNF4AP41235 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.89■□□□□ 0.13
HNF4AP41235 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.89■□□□□ 0.13
HNF4AP41235 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.89■□□□□ 0.13
HNF4AP41235 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.89■□□□□ 0.13
HNF4AP41235 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.89■□□□□ 0.13
HNF4AP41235 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.89■□□□□ 0.13
HNF4AP41235 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
HNF4AP41235 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
HNF4AP41235 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms