Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXC12P31275 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
HOXC12P31275 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.54□□□□□ -0.08
HOXC12P31275 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.54□□□□□ -0.08
HOXC12P31275 AC236430.1-201ENST00000402231 743 ntBASIC14.54□□□□□ -0.08
HOXC12P31275 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.54□□□□□ -0.08
HOXC12P31275 AC005237.2-201ENST00000434368 219 ntBASIC14.54□□□□□ -0.08
HOXC12P31275 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC14.54□□□□□ -0.08
HOXC12P31275 CNN2P2-201ENST00000443536 909 ntBASIC14.54□□□□□ -0.08
HOXC12P31275 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC14.54□□□□□ -0.08
HOXC12P31275 CNN2P3-201ENST00000450201 906 ntBASIC14.54□□□□□ -0.08
HOXC12P31275 GAPDHP21-201ENST00000450301 1010 ntBASIC14.54□□□□□ -0.08
HOXC12P31275 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HOXC12P31275 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.54□□□□□ -0.08
HOXC12P31275 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
HOXC12P31275 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.54□□□□□ -0.08
HOXC12P31275 AC051619.7-201ENST00000568314 623 ntBASIC14.54□□□□□ -0.08
HOXC12P31275 RN7SL204P-201ENST00000582831 262 ntBASIC14.54□□□□□ -0.08
HOXC12P31275 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.54□□□□□ -0.08
HOXC12P31275 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 AL136317.3-201ENST00000618497 906 ntBASIC14.54□□□□□ -0.08
HOXC12P31275 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXC12P31275 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXC12P31275 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.54□□□□□ -0.08
HOXC12P31275 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXC12P31275 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
HOXC12P31275 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.54□□□□□ -0.08
HOXC12P31275 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
HOXC12P31275 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXC12P31275 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
HOXC12P31275 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
HOXC12P31275 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HOXC12P31275 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXC12P31275 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
HOXC12P31275 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HOXC12P31275 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
HOXC12P31275 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 AL645728.1-201ENST00000366221 2101 ntBASIC14.53□□□□□ -0.08
HOXC12P31275 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
HOXC12P31275 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXC12P31275 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXC12P31275 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.53□□□□□ -0.08
HOXC12P31275 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.53□□□□□ -0.08
HOXC12P31275 TSPY16P-201ENST00000449843 468 ntBASIC14.53□□□□□ -0.08
HOXC12P31275 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXC12P31275 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXC12P31275 AL512356.2-201ENST00000546955 174 ntBASIC14.53□□□□□ -0.08
HOXC12P31275 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.53□□□□□ -0.08
HOXC12P31275 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
HOXC12P31275 AC020765.3-201ENST00000613051 740 ntBASIC14.53□□□□□ -0.08
HOXC12P31275 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
HOXC12P31275 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
HOXC12P31275 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXC12P31275 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms