Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC13.89□□□□□ -0.19
USF1P22415 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USF1P22415 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
USF1P22415 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
USF1P22415 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC13.89□□□□□ -0.19
USF1P22415 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
USF1P22415 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 NARF-206ENST00000457415 1668 ntTSL 5 BASIC13.88□□□□□ -0.19
USF1P22415 GRAMD4P3-201ENST00000621665 1669 ntBASIC13.88□□□□□ -0.19
USF1P22415 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 SLC9A3P2-201ENST00000447821 2021 ntBASIC13.88□□□□□ -0.19
USF1P22415 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
USF1P22415 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 MIR661-201ENST00000384842 89 ntBASIC13.88□□□□□ -0.19
USF1P22415 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 AC105233.2-201ENST00000523697 349 ntBASIC13.88□□□□□ -0.19
USF1P22415 AC027369.6-201ENST00000525520 931 ntBASIC13.88□□□□□ -0.19
USF1P22415 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC13.88□□□□□ -0.19
USF1P22415 AF228730.5-201ENST00000530288 346 ntBASIC13.88□□□□□ -0.19
USF1P22415 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC13.88□□□□□ -0.19
USF1P22415 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.88□□□□□ -0.19
USF1P22415 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC13.88□□□□□ -0.19
USF1P22415 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC13.88□□□□□ -0.19
USF1P22415 CYP2A7P1-201ENST00000595391 815 ntBASIC13.88□□□□□ -0.19
USF1P22415 COQ4-205ENST00000609948 956 ntTSL 2 BASIC13.88□□□□□ -0.19
USF1P22415 AC018529.1-201ENST00000613063 361 ntBASIC13.88□□□□□ -0.19
USF1P22415 AC073592.8-201ENST00000624126 511 ntBASIC13.88□□□□□ -0.19
USF1P22415 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC13.88□□□□□ -0.19
USF1P22415 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC13.88□□□□□ -0.19
USF1P22415 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC13.88□□□□□ -0.19
USF1P22415 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC13.88□□□□□ -0.19
USF1P22415 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.88□□□□□ -0.19
USF1P22415 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC13.88□□□□□ -0.19
USF1P22415 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.88□□□□□ -0.19
USF1P22415 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13.88□□□□□ -0.19
USF1P22415 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC13.88□□□□□ -0.19
USF1P22415 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
USF1P22415 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
USF1P22415 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.87□□□□□ -0.19
USF1P22415 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC13.87□□□□□ -0.19
USF1P22415 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
USF1P22415 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC13.87□□□□□ -0.19
USF1P22415 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC13.87□□□□□ -0.19
USF1P22415 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
USF1P22415 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC13.87□□□□□ -0.19
USF1P22415 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC13.87□□□□□ -0.19
USF1P22415 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC13.87□□□□□ -0.19
USF1P22415 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.87□□□□□ -0.19
USF1P22415 AL138918.1-201ENST00000568306 659 ntBASIC13.87□□□□□ -0.19
USF1P22415 AC003101.2-201ENST00000612557 442 ntBASIC13.87□□□□□ -0.19
USF1P22415 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC13.87□□□□□ -0.19
USF1P22415 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC13.87□□□□□ -0.19
USF1P22415 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
USF1P22415 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC13.87□□□□□ -0.19
USF1P22415 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
USF1P22415 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC13.86□□□□□ -0.19
USF1P22415 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
USF1P22415 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC13.86□□□□□ -0.19
USF1P22415 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
USF1P22415 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
USF1P22415 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC13.86□□□□□ -0.19
USF1P22415 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
USF1P22415 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms