Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC15.43■□□□□ 0.06
COL5A1P20908 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL5A1P20908 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
COL5A1P20908 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL5A1P20908 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL5A1P20908 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.42■□□□□ 0.06
COL5A1P20908 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL5A1P20908 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
COL5A1P20908 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL5A1P20908 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL5A1P20908 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL5A1P20908 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.42■□□□□ 0.06
COL5A1P20908 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL5A1P20908 AC005622.1-201ENST00000636801 1703 ntBASIC15.42■□□□□ 0.06
COL5A1P20908 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL5A1P20908 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
COL5A1P20908 MIR1247-201ENST00000408206 136 ntBASIC15.42■□□□□ 0.06
COL5A1P20908 FAM86LP-201ENST00000478302 853 ntBASIC15.42■□□□□ 0.06
COL5A1P20908 RPL13AP25-201ENST00000484130 612 ntBASIC15.42■□□□□ 0.06
COL5A1P20908 AC108725.1-201ENST00000495472 409 ntBASIC15.42■□□□□ 0.06
COL5A1P20908 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.42■□□□□ 0.06
COL5A1P20908 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.42■□□□□ 0.06
COL5A1P20908 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC15.42■□□□□ 0.06
COL5A1P20908 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC15.42■□□□□ 0.06
COL5A1P20908 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL5A1P20908 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL5A1P20908 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.42■□□□□ 0.06
COL5A1P20908 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.42■□□□□ 0.06
COL5A1P20908 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
COL5A1P20908 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL5A1P20908 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
COL5A1P20908 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
COL5A1P20908 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL5A1P20908 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL5A1P20908 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.42■□□□□ 0.06
COL5A1P20908 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
COL5A1P20908 PRORSD1P-202ENST00000563365 2154 ntBASIC15.42■□□□□ 0.06
COL5A1P20908 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL5A1P20908 AC093525.8-201ENST00000624099 1342 ntBASIC15.42■□□□□ 0.06
COL5A1P20908 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.41■□□□□ 0.06
COL5A1P20908 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 BRWD1P1-201ENST00000401091 371 ntBASIC15.41■□□□□ 0.06
COL5A1P20908 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
COL5A1P20908 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.41■□□□□ 0.06
COL5A1P20908 PARP8-206ENST00000503665 572 ntTSL 4 BASIC15.41■□□□□ 0.06
COL5A1P20908 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
COL5A1P20908 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.41■□□□□ 0.06
COL5A1P20908 AC079316.1-201ENST00000548397 411 ntBASIC15.41■□□□□ 0.06
COL5A1P20908 AC120045.2-201ENST00000567334 178 ntBASIC15.41■□□□□ 0.06
COL5A1P20908 RN7SL219P-201ENST00000582872 296 ntBASIC15.41■□□□□ 0.06
COL5A1P20908 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
COL5A1P20908 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.41■□□□□ 0.06
COL5A1P20908 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.41■□□□□ 0.06
COL5A1P20908 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.41■□□□□ 0.06
COL5A1P20908 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.41■□□□□ 0.06
COL5A1P20908 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.41■□□□□ 0.06
COL5A1P20908 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
COL5A1P20908 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
COL5A1P20908 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
COL5A1P20908 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
COL5A1P20908 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL5A1P20908 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
COL5A1P20908 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
COL5A1P20908 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.41■□□□□ 0.06
COL5A1P20908 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC15.4■□□□□ 0.06
COL5A1P20908 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC15.4■□□□□ 0.06
COL5A1P20908 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.4■□□□□ 0.06
COL5A1P20908 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.4■□□□□ 0.06
COL5A1P20908 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.4■□□□□ 0.06
COL5A1P20908 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.4■□□□□ 0.06
COL5A1P20908 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.4■□□□□ 0.06
COL5A1P20908 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.4■□□□□ 0.06
COL5A1P20908 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.4■□□□□ 0.06
COL5A1P20908 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.4■□□□□ 0.06
COL5A1P20908 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 AC243562.2-201ENST00000561247 970 ntBASIC15.4■□□□□ 0.06
COL5A1P20908 IGHV3OR16-16-201ENST00000563644 343 ntBASIC15.4■□□□□ 0.06
COL5A1P20908 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.4■□□□□ 0.06
COL5A1P20908 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.4■□□□□ 0.06
COL5A1P20908 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms