Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.64■□□□□ 0.25
COL6A3P12111 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A3P12111 AC103988.2-201ENST00000561804 725 ntBASIC16.64■□□□□ 0.25
COL6A3P12111 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC16.64■□□□□ 0.25
COL6A3P12111 FO393412.1-201ENST00000619841 382 ntBASIC16.64■□□□□ 0.25
COL6A3P12111 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
COL6A3P12111 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
COL6A3P12111 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A3P12111 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
COL6A3P12111 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
COL6A3P12111 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A3P12111 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
COL6A3P12111 CYP4F24P-201ENST00000586049 1580 ntBASIC16.64■□□□□ 0.25
COL6A3P12111 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A3P12111 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A3P12111 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A3P12111 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.64■□□□□ 0.25
COL6A3P12111 RPL17P45-201ENST00000586289 509 ntBASIC16.64■□□□□ 0.25
COL6A3P12111 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A3P12111 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A3P12111 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A3P12111 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
COL6A3P12111 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A3P12111 PDIA3P2-201ENST00000428073 158 ntBASIC16.63■□□□□ 0.25
COL6A3P12111 TARDBPP1-201ENST00000442013 1203 ntBASIC16.63■□□□□ 0.25
COL6A3P12111 VDAC1P7-201ENST00000462417 847 ntBASIC16.63■□□□□ 0.25
COL6A3P12111 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.63■□□□□ 0.25
COL6A3P12111 AC022748.3-201ENST00000621828 275 ntBASIC16.63■□□□□ 0.25
COL6A3P12111 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A3P12111 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A3P12111 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
COL6A3P12111 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A3P12111 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A3P12111 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
COL6A3P12111 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A3P12111 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC16.63■□□□□ 0.25
COL6A3P12111 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A3P12111 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A3P12111 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.63■□□□□ 0.25
COL6A3P12111 PTPN20CP-201ENST00000614090 920 ntBASIC16.63■□□□□ 0.25
COL6A3P12111 AL645728.2-202ENST00000641679 227 ntBASIC16.63■□□□□ 0.25
COL6A3P12111 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.63■□□□□ 0.25
COL6A3P12111 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.63■□□□□ 0.25
COL6A3P12111 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
COL6A3P12111 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.63■□□□□ 0.25
COL6A3P12111 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC16.63■□□□□ 0.25
COL6A3P12111 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A3P12111 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A3P12111 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.63■□□□□ 0.25
COL6A3P12111 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC16.63■□□□□ 0.25
COL6A3P12111 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.63■□□□□ 0.25
COL6A3P12111 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.63■□□□□ 0.25
COL6A3P12111 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
COL6A3P12111 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.62■□□□□ 0.25
COL6A3P12111 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A3P12111 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.62■□□□□ 0.25
COL6A3P12111 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
COL6A3P12111 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A3P12111 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.62■□□□□ 0.25
COL6A3P12111 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.62■□□□□ 0.25
COL6A3P12111 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.62■□□□□ 0.25
COL6A3P12111 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC16.62■□□□□ 0.25
COL6A3P12111 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A3P12111 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 KRT8P35-201ENST00000483942 1338 ntBASIC16.62■□□□□ 0.25
COL6A3P12111 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
COL6A3P12111 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 TOMM22P5-201ENST00000416399 439 ntBASIC16.62■□□□□ 0.25
COL6A3P12111 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC16.62■□□□□ 0.25
COL6A3P12111 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A3P12111 MIR6816-201ENST00000620368 66 ntBASIC16.62■□□□□ 0.25
COL6A3P12111 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A3P12111 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A3P12111 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.61■□□□□ 0.25
COL6A3P12111 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms