Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TNFP01375 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.9■□□□□ 0.14
TNFP01375 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.9■□□□□ 0.14
TNFP01375 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.9■□□□□ 0.14
TNFP01375 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.9■□□□□ 0.14
TNFP01375 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.9■□□□□ 0.14
TNFP01375 AC008738.7-201ENST00000609744 511 ntBASIC15.9■□□□□ 0.14
TNFP01375 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.9■□□□□ 0.14
TNFP01375 AF228730.6-201ENST00000641497 218 ntBASIC15.9■□□□□ 0.14
TNFP01375 AC084121.3-201ENST00000641716 218 ntBASIC15.9■□□□□ 0.14
TNFP01375 AC105233.6-201ENST00000642093 218 ntBASIC15.9■□□□□ 0.14
TNFP01375 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TNFP01375 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
TNFP01375 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
TNFP01375 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
TNFP01375 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TNFP01375 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.9■□□□□ 0.14
TNFP01375 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TNFP01375 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TNFP01375 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TNFP01375 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TNFP01375 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TNFP01375 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TNFP01375 BTBD7P1-201ENST00000447253 1453 ntBASIC15.9■□□□□ 0.14
TNFP01375 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TNFP01375 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TNFP01375 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.9■□□□□ 0.14
TNFP01375 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
TNFP01375 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TNFP01375 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.89■□□□□ 0.13
TNFP01375 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
TNFP01375 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.89■□□□□ 0.13
TNFP01375 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
TNFP01375 NFIC-211ENST00000641145 8399 ntBASIC15.89■□□□□ 0.13
TNFP01375 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.89■□□□□ 0.13
TNFP01375 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TNFP01375 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TNFP01375 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TNFP01375 AC135586.1-201ENST00000539323 574 ntBASIC15.89■□□□□ 0.13
TNFP01375 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.89■□□□□ 0.13
TNFP01375 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.89■□□□□ 0.13
TNFP01375 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 MIR6069-201ENST00000620069 79 ntBASIC15.89■□□□□ 0.13
TNFP01375 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.89■□□□□ 0.13
TNFP01375 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.89■□□□□ 0.13
TNFP01375 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.89■□□□□ 0.13
TNFP01375 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.89■□□□□ 0.13
TNFP01375 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TNFP01375 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.89■□□□□ 0.13
TNFP01375 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TNFP01375 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TNFP01375 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TNFP01375 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TNFP01375 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.88■□□□□ 0.13
TNFP01375 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.88■□□□□ 0.13
TNFP01375 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TNFP01375 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TNFP01375 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.88■□□□□ 0.13
TNFP01375 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TNFP01375 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.88■□□□□ 0.13
TNFP01375 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.88■□□□□ 0.13
TNFP01375 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TNFP01375 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TNFP01375 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TNFP01375 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.88■□□□□ 0.13
TNFP01375 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.88■□□□□ 0.13
TNFP01375 CRB3P1-201ENST00000449338 276 ntBASIC15.88■□□□□ 0.13
TNFP01375 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TNFP01375 ZNF890P-202ENST00000530367 1156 ntBASIC15.88■□□□□ 0.13
TNFP01375 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TNFP01375 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TNFP01375 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.88■□□□□ 0.13
TNFP01375 AL512361.1-201ENST00000554200 418 ntBASIC15.88■□□□□ 0.13
TNFP01375 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.88■□□□□ 0.13
TNFP01375 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.88■□□□□ 0.13
TNFP01375 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
TNFP01375 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.88■□□□□ 0.13
TNFP01375 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms