Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTDNEP1O95476 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.87■□□□□ 0.61
CTDNEP1O95476 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
CTDNEP1O95476 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTDNEP1O95476 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
CTDNEP1O95476 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CTDNEP1O95476 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTDNEP1O95476 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.87■□□□□ 0.61
CTDNEP1O95476 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.87■□□□□ 0.61
CTDNEP1O95476 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CTDNEP1O95476 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTDNEP1O95476 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTDNEP1O95476 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTDNEP1O95476 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTDNEP1O95476 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 PRAL-201ENST00000624952 3286 ntBASIC18.86■□□□□ 0.61
CTDNEP1O95476 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTDNEP1O95476 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTDNEP1O95476 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTDNEP1O95476 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CTDNEP1O95476 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTDNEP1O95476 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTDNEP1O95476 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CTDNEP1O95476 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTDNEP1O95476 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTDNEP1O95476 MTDHP5-201ENST00000598980 586 ntBASIC18.86■□□□□ 0.61
CTDNEP1O95476 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 AC134407.2-201ENST00000625089 1978 ntBASIC18.86■□□□□ 0.61
CTDNEP1O95476 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
CTDNEP1O95476 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 MKNK2P1-201ENST00000437526 628 ntBASIC18.85■□□□□ 0.61
CTDNEP1O95476 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 AC069335.1-201ENST00000489972 472 ntBASIC18.85■□□□□ 0.61
CTDNEP1O95476 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 FAM86C2P-203ENST00000528684 1004 ntBASIC18.85■□□□□ 0.61
CTDNEP1O95476 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CTDNEP1O95476 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTDNEP1O95476 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.84■□□□□ 0.61
CTDNEP1O95476 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CTDNEP1O95476 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CTDNEP1O95476 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.84■□□□□ 0.61
CTDNEP1O95476 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.84■□□□□ 0.61
CTDNEP1O95476 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CTDNEP1O95476 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CTDNEP1O95476 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms