Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.73■□□□□ 0.43
RNF40O75150 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.73■□□□□ 0.43
RNF40O75150 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.73■□□□□ 0.43
RNF40O75150 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.73■□□□□ 0.43
RNF40O75150 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.73■□□□□ 0.43
RNF40O75150 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.73■□□□□ 0.43
RNF40O75150 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
RNF40O75150 AC004877.2-201ENST00000623941 599 ntBASIC17.73■□□□□ 0.43
RNF40O75150 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.73■□□□□ 0.43
RNF40O75150 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.73■□□□□ 0.43
RNF40O75150 MTHFR-217ENST00000641820 1569 ntBASIC17.73■□□□□ 0.43
RNF40O75150 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.73■□□□□ 0.43
RNF40O75150 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.73■□□□□ 0.43
RNF40O75150 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
RNF40O75150 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
RNF40O75150 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
RNF40O75150 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.72■□□□□ 0.43
RNF40O75150 BX276092.7-203ENST00000637198 1536 ntBASIC17.72■□□□□ 0.43
RNF40O75150 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
RNF40O75150 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
RNF40O75150 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RNF40O75150 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
RNF40O75150 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
RNF40O75150 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.72■□□□□ 0.43
RNF40O75150 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.72■□□□□ 0.43
RNF40O75150 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.72■□□□□ 0.43
RNF40O75150 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
RNF40O75150 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
RNF40O75150 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
RNF40O75150 PTCHD3P3-201ENST00000403073 906 ntBASIC17.72■□□□□ 0.43
RNF40O75150 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.72■□□□□ 0.43
RNF40O75150 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.72■□□□□ 0.43
RNF40O75150 IGHV3-52-201ENST00000519770 353 ntBASIC17.72■□□□□ 0.43
RNF40O75150 PDPK2P-202ENST00000562415 1191 ntBASIC17.72■□□□□ 0.43
RNF40O75150 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.72■□□□□ 0.43
RNF40O75150 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.72■□□□□ 0.43
RNF40O75150 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
RNF40O75150 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.72■□□□□ 0.43
RNF40O75150 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
RNF40O75150 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.72■□□□□ 0.43
RNF40O75150 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.72■□□□□ 0.43
RNF40O75150 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.72■□□□□ 0.43
RNF40O75150 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 BCAR1-209ENST00000546196 1340 ntBASIC17.72■□□□□ 0.43
RNF40O75150 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RNF40O75150 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF40O75150 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
RNF40O75150 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.71■□□□□ 0.43
RNF40O75150 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.71■□□□□ 0.43
RNF40O75150 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.71■□□□□ 0.43
RNF40O75150 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
RNF40O75150 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.71■□□□□ 0.43
RNF40O75150 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.71■□□□□ 0.43
RNF40O75150 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.71■□□□□ 0.43
RNF40O75150 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
RNF40O75150 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.71■□□□□ 0.43
RNF40O75150 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
RNF40O75150 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.71■□□□□ 0.43
RNF40O75150 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF40O75150 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms