Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 TSPY16P-201ENST00000449843 468 ntBASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 AC069120.2-201ENST00000524091 540 ntBASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 AC016396.2-201ENST00000562575 1417 ntBASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TMX2-CTNND1H3BSU7 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 RNU1-129P-201ENST00000384064 167 ntBASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 IGHV3-42-201ENST00000520410 361 ntBASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 U1.21-201ENST00000580816 167 ntBASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 AC022188.1-201ENST00000620960 1664 ntBASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 PKD1P1-201ENST00000458669 6805 ntBASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.1■□□□□ 0.17
TMX2-CTNND1H3BSU7 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TMX2-CTNND1H3BSU7 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.09■□□□□ 0.17
TMX2-CTNND1H3BSU7 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.09■□□□□ 0.17
TMX2-CTNND1H3BSU7 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 6.7 ms