Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 HLA-A-202ENST00000376806 1854 ntBASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 PDIA3P1-201ENST00000471856 1510 ntBASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC30.76■■■□□ 2.52
SHROOM4Q9ULL8 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC30.76■■■□□ 2.52
SHROOM4Q9ULL8 AL589987.1-201ENST00000453380 819 ntBASIC30.76■■■□□ 2.52
SHROOM4Q9ULL8 FO681548.1-201ENST00000455617 1132 ntBASIC30.76■■■□□ 2.52
SHROOM4Q9ULL8 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
SHROOM4Q9ULL8 AL391069.4-201ENST00000609583 481 ntBASIC30.76■■■□□ 2.52
SHROOM4Q9ULL8 AL033527.5-202ENST00000641632 1098 ntBASIC30.76■■■□□ 2.52
SHROOM4Q9ULL8 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
SHROOM4Q9ULL8 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
SHROOM4Q9ULL8 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC30.76■■■□□ 2.52
SHROOM4Q9ULL8 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC30.76■■■□□ 2.52
SHROOM4Q9ULL8 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
SHROOM4Q9ULL8 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
SHROOM4Q9ULL8 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC30.76■■■□□ 2.51
SHROOM4Q9ULL8 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC30.76■■■□□ 2.51
SHROOM4Q9ULL8 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC30.76■■■□□ 2.51
SHROOM4Q9ULL8 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC30.76■■■□□ 2.51
SHROOM4Q9ULL8 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC30.76■■■□□ 2.51
SHROOM4Q9ULL8 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
SHROOM4Q9ULL8 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
SHROOM4Q9ULL8 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
SHROOM4Q9ULL8 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
SHROOM4Q9ULL8 MIR1247-201ENST00000408206 136 ntBASIC30.76■■■□□ 2.51
SHROOM4Q9ULL8 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
SHROOM4Q9ULL8 SDHAP3-202ENST00000515467 728 ntBASIC30.76■■■□□ 2.51
SHROOM4Q9ULL8 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 AC022211.2-201ENST00000585075 2527 ntBASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 AGER-214ENST00000538695 487 ntTSL 2 BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 RHOQP1-201ENST00000555758 579 ntBASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM4Q9ULL8 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 AC006538.1-201ENST00000567905 1585 ntBASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 COG4-212ENST00000564653 590 ntTSL 5 BASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHROOM4Q9ULL8 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 AC108725.1-201ENST00000495472 409 ntBASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 MIR5189-201ENST00000577370 114 ntBASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 RN7SL219P-201ENST00000582872 296 ntBASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC30.73■■■□□ 2.51
SHROOM4Q9ULL8 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 AP002490.2-201ENST00000524791 560 ntBASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 NAA38-207ENST00000576861 556 ntTSL 3 BASIC30.72■■■□□ 2.51
SHROOM4Q9ULL8 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms