Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM39Q9HCM9 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM39Q9HCM9 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM39Q9HCM9 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
TRIM39Q9HCM9 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.27■□□□□ 0.19
TRIM39Q9HCM9 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.27■□□□□ 0.19
TRIM39Q9HCM9 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 TSEN15P1-201ENST00000423257 515 ntBASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 SLC25A39P2-201ENST00000537614 270 ntBASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 AC079328.2-201ENST00000561241 3354 ntBASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TRIM39Q9HCM9 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 AC142381.1-201ENST00000426099 345 ntBASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 AC093724.1-201ENST00000448659 1027 ntBASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 AC092171.3-201ENST00000610122 2651 ntBASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 PCDHA14-201ENST00000506751 2298 ntBASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM39Q9HCM9 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 AL139400.1-201ENST00000366220 510 ntBASIC16.24■□□□□ 0.19
TRIM39Q9HCM9 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms