Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 AC104306.2-201ENST00000451877 341 ntBASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 AC093433.1-201ENST00000458048 571 ntBASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 NEU3-202ENST00000526068 431 ntTSL 2 BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 PRKN-211ENST00000615065 261 ntTSL 5 BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 AL607033.1-201ENST00000623900 1599 ntBASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
ZNF541Q9H0D2 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 EEF1DP4-201ENST00000446006 880 ntBASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ZNF541Q9H0D2 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 ELP6-209ENST00000446787 894 ntTSL 3 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 OARD1-212ENST00000482515 832 ntTSL 2 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 AC016629.1-201ENST00000596579 586 ntBASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 AC005622.1-201ENST00000636801 1703 ntBASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
ZNF541Q9H0D2 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC19.28■□□□□ 0.68
ZNF541Q9H0D2 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms