Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 BANF1P1-201ENST00000553684 263 ntBASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 AC243562.2-201ENST00000561247 970 ntBASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 UBALD1-205ENST00000590891 2641 ntBASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 AC087499.5-201ENST00000452760 1342 ntBASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 KRT8P12-202ENST00000472924 1397 ntBASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 AC004987.2-201ENST00000395959 1148 ntBASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 FO393414.2-201ENST00000405153 598 ntBASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 AC092580.3-201ENST00000430932 139 ntBASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 CCDC74BP1-201ENST00000508880 1123 ntBASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 AL138828.2-201ENST00000615812 383 ntBASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 AL590560.3-201ENST00000623350 461 ntBASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC20.77■□□□□ 0.92
CHMP4AQ9BY43 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
CHMP4AQ9BY43 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
CHMP4AQ9BY43 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC20.77■□□□□ 0.91
CHMP4AQ9BY43 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
CHMP4AQ9BY43 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 REXO1L8P-201ENST00000604378 1897 ntBASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 ZNF890P-202ENST00000530367 1156 ntBASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 AL390955.2-201ENST00000603032 514 ntBASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4AQ9BY43 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms