Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.71■□□□□ 0.59
USP28Q96RU2 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.71■□□□□ 0.59
USP28Q96RU2 AC018845.2-201ENST00000568326 409 ntBASIC18.71■□□□□ 0.59
USP28Q96RU2 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.71■□□□□ 0.59
USP28Q96RU2 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP28Q96RU2 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.71■□□□□ 0.59
USP28Q96RU2 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.71■□□□□ 0.59
USP28Q96RU2 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP28Q96RU2 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
USP28Q96RU2 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP28Q96RU2 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USP28Q96RU2 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USP28Q96RU2 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.71■□□□□ 0.58
USP28Q96RU2 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.58
USP28Q96RU2 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
USP28Q96RU2 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
USP28Q96RU2 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
USP28Q96RU2 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.7■□□□□ 0.58
USP28Q96RU2 AC016027.1-202ENST00000607927 1699 ntBASIC18.7■□□□□ 0.58
USP28Q96RU2 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.7■□□□□ 0.58
USP28Q96RU2 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
USP28Q96RU2 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.7■□□□□ 0.58
USP28Q96RU2 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
USP28Q96RU2 KRT18P2-201ENST00000447938 1258 ntBASIC18.7■□□□□ 0.58
USP28Q96RU2 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
USP28Q96RU2 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.7■□□□□ 0.58
USP28Q96RU2 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
USP28Q96RU2 AC079776.4-201ENST00000511039 504 ntBASIC18.7■□□□□ 0.58
USP28Q96RU2 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.7■□□□□ 0.58
USP28Q96RU2 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.7■□□□□ 0.58
USP28Q96RU2 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 AL662844.1-201ENST00000546340 181 ntBASIC18.7■□□□□ 0.58
USP28Q96RU2 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.7■□□□□ 0.58
USP28Q96RU2 AC034105.1-201ENST00000563488 319 ntBASIC18.7■□□□□ 0.58
USP28Q96RU2 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 AC023141.13-201ENST00000604991 943 ntBASIC18.7■□□□□ 0.58
USP28Q96RU2 AL078644.1-201ENST00000609881 752 ntBASIC18.7■□□□□ 0.58
USP28Q96RU2 AC025580.3-201ENST00000617932 1424 ntBASIC18.7■□□□□ 0.58
USP28Q96RU2 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.7■□□□□ 0.58
USP28Q96RU2 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.7■□□□□ 0.58
USP28Q96RU2 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP28Q96RU2 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.69■□□□□ 0.58
USP28Q96RU2 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
USP28Q96RU2 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
USP28Q96RU2 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.69■□□□□ 0.58
USP28Q96RU2 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP28Q96RU2 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP28Q96RU2 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
USP28Q96RU2 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
USP28Q96RU2 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP28Q96RU2 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.69■□□□□ 0.58
USP28Q96RU2 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
USP28Q96RU2 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP28Q96RU2 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP28Q96RU2 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP28Q96RU2 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
USP28Q96RU2 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP28Q96RU2 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
USP28Q96RU2 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.69■□□□□ 0.58
USP28Q96RU2 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.69■□□□□ 0.58
USP28Q96RU2 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.69■□□□□ 0.58
USP28Q96RU2 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP28Q96RU2 AC004877.2-201ENST00000623941 599 ntBASIC18.69■□□□□ 0.58
USP28Q96RU2 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP28Q96RU2 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.69■□□□□ 0.58
USP28Q96RU2 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
USP28Q96RU2 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP28Q96RU2 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
USP28Q96RU2 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
USP28Q96RU2 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.69■□□□□ 0.58
USP28Q96RU2 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.69■□□□□ 0.58
USP28Q96RU2 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.69■□□□□ 0.58
USP28Q96RU2 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP28Q96RU2 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
USP28Q96RU2 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
USP28Q96RU2 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
USP28Q96RU2 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.68■□□□□ 0.58
USP28Q96RU2 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 AC104109.2-201ENST00000602919 1418 ntBASIC18.68■□□□□ 0.58
USP28Q96RU2 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
USP28Q96RU2 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP28Q96RU2 AC140658.5-201ENST00000438532 169 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms