Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHFRQ96EP1 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHFRQ96EP1 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.57■□□□□ 0.24
CHFRQ96EP1 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 AC112492.5-201ENST00000421897 457 ntBASIC16.56■□□□□ 0.24
CHFRQ96EP1 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 AL139010.1-201ENST00000454878 894 ntBASIC16.56■□□□□ 0.24
CHFRQ96EP1 RN7SL837P-201ENST00000463010 287 ntBASIC16.56■□□□□ 0.24
CHFRQ96EP1 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 TPRX2P-201ENST00000535362 881 ntBASIC16.56■□□□□ 0.24
CHFRQ96EP1 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 AL162274.1-201ENST00000617191 1098 ntBASIC16.56■□□□□ 0.24
CHFRQ96EP1 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.56■□□□□ 0.24
CHFRQ96EP1 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.56■□□□□ 0.24
CHFRQ96EP1 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHFRQ96EP1 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 PCGF3-213ENST00000620529 1899 ntBASIC16.55■□□□□ 0.24
CHFRQ96EP1 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 AC092337.1-201ENST00000568699 1129 ntBASIC16.55■□□□□ 0.24
CHFRQ96EP1 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 AC099568.2-201ENST00000609194 695 ntBASIC16.55■□□□□ 0.24
CHFRQ96EP1 MIR6069-201ENST00000620069 79 ntBASIC16.55■□□□□ 0.24
CHFRQ96EP1 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHFRQ96EP1 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CHFRQ96EP1 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CHFRQ96EP1 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CHFRQ96EP1 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHFRQ96EP1 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHFRQ96EP1 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CHFRQ96EP1 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
CHFRQ96EP1 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHFRQ96EP1 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.54■□□□□ 0.24
CHFRQ96EP1 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHFRQ96EP1 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHFRQ96EP1 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHFRQ96EP1 TMEM14DP-201ENST00000422205 345 ntBASIC16.54■□□□□ 0.24
CHFRQ96EP1 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CHFRQ96EP1 ACA64.2-201ENST00000459014 129 ntBASIC16.54■□□□□ 0.24
CHFRQ96EP1 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHFRQ96EP1 AC025048.3-201ENST00000590609 569 ntBASIC16.54■□□□□ 0.24
CHFRQ96EP1 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.54■□□□□ 0.24
CHFRQ96EP1 AC005702.4-201ENST00000618393 416 ntBASIC16.54■□□□□ 0.24
CHFRQ96EP1 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms