Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HPS3Q969F9 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.13■□□□□ 0.49
HPS3Q969F9 FOXO1B-201ENST00000504678 1527 ntBASIC18.13■□□□□ 0.49
HPS3Q969F9 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HPS3Q969F9 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.13■□□□□ 0.49
HPS3Q969F9 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.13■□□□□ 0.49
HPS3Q969F9 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
HPS3Q969F9 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.12■□□□□ 0.49
HPS3Q969F9 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
HPS3Q969F9 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.12■□□□□ 0.49
HPS3Q969F9 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
HPS3Q969F9 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.12■□□□□ 0.49
HPS3Q969F9 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HPS3Q969F9 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.12■□□□□ 0.49
HPS3Q969F9 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.12■□□□□ 0.49
HPS3Q969F9 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.12■□□□□ 0.49
HPS3Q969F9 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 YBX2P1-201ENST00000394192 760 ntBASIC18.12■□□□□ 0.49
HPS3Q969F9 AC004832.2-201ENST00000426397 482 ntBASIC18.12■□□□□ 0.49
HPS3Q969F9 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.12■□□□□ 0.49
HPS3Q969F9 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HPS3Q969F9 PRYP6-201ENST00000514804 343 ntBASIC18.12■□□□□ 0.49
HPS3Q969F9 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.12■□□□□ 0.49
HPS3Q969F9 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.12■□□□□ 0.49
HPS3Q969F9 AL135744.1-201ENST00000565098 629 ntBASIC18.12■□□□□ 0.49
HPS3Q969F9 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.12■□□□□ 0.49
HPS3Q969F9 RARRES2P8-201ENST00000566335 367 ntBASIC18.12■□□□□ 0.49
HPS3Q969F9 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.12■□□□□ 0.49
HPS3Q969F9 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
HPS3Q969F9 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 AL161645.1-201ENST00000622716 1255 ntBASIC18.12■□□□□ 0.49
HPS3Q969F9 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
HPS3Q969F9 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.12■□□□□ 0.49
HPS3Q969F9 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.12■□□□□ 0.49
HPS3Q969F9 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.12■□□□□ 0.49
HPS3Q969F9 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
HPS3Q969F9 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC18.12■□□□□ 0.49
HPS3Q969F9 AC046158.3-201ENST00000624947 2558 ntBASIC18.12■□□□□ 0.49
HPS3Q969F9 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
HPS3Q969F9 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HPS3Q969F9 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.12■□□□□ 0.49
HPS3Q969F9 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HPS3Q969F9 U82695.1-201ENST00000635752 1889 ntBASIC18.12■□□□□ 0.49
HPS3Q969F9 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
HPS3Q969F9 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
HPS3Q969F9 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
HPS3Q969F9 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 TFAMP1-201ENST00000412727 736 ntBASIC18.11■□□□□ 0.49
HPS3Q969F9 KRT8P48-201ENST00000515599 1220 ntBASIC18.11■□□□□ 0.49
HPS3Q969F9 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.11■□□□□ 0.49
HPS3Q969F9 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.11■□□□□ 0.49
HPS3Q969F9 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
HPS3Q969F9 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC18.11■□□□□ 0.49
HPS3Q969F9 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.11■□□□□ 0.49
HPS3Q969F9 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.11■□□□□ 0.49
HPS3Q969F9 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HPS3Q969F9 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
HPS3Q969F9 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
HPS3Q969F9 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HPS3Q969F9 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
HPS3Q969F9 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HPS3Q969F9 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 HYMAI-201ENST00000635591 3347 ntBASIC18.1■□□□□ 0.49
HPS3Q969F9 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 PRAL-201ENST00000624952 3286 ntBASIC18.1■□□□□ 0.49
HPS3Q969F9 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.1■□□□□ 0.49
HPS3Q969F9 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms