Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL355355.2-201ENST00000442321 338 ntBASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 NAT14-202ENST00000587400 416 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 AC130371.2-201ENST00000619443 611 ntBASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 DECR2-212ENST00000627716 352 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 AL024508.2-201ENST00000607749 1894 ntBASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC28AQ8IWP9 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 SRI-203ENST00000419179 1307 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 MME-217ENST00000616757 1315 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 TMBIM7P-203ENST00000641617 1718 ntBASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 RPS2P55-201ENST00000397318 883 ntBASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 AC012618.2-201ENST00000428058 849 ntBASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 AC107956.1-201ENST00000494359 873 ntBASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 CYGB-204ENST00000589342 815 ntTSL 3 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 GRAMD4P8-201ENST00000605465 1115 ntBASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 TMEM191A-211ENST00000637163 1067 ntBASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28AQ8IWP9 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 HOXB1-202ENST00000577092 1414 ntBASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 CES1P1-201ENST00000421606 1704 ntBASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 AC132938.6-201ENST00000623828 1655 ntBASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC28AQ8IWP9 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms