Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 ZBTB12BP-201ENST00000314232 1122 ntBASIC20.3■□□□□ 0.84
RC3H1Q5TC82 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 USP40-206ENST00000443711 628 ntTSL 2 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 AC012441.1-201ENST00000446669 685 ntBASIC20.3■□□□□ 0.84
RC3H1Q5TC82 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 FTH1P14-201ENST00000482930 551 ntBASIC20.3■□□□□ 0.84
RC3H1Q5TC82 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 AL592424.1-201ENST00000563624 1536 ntBASIC20.3■□□□□ 0.84
RC3H1Q5TC82 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 AC141586.5-201ENST00000624546 2050 ntBASIC20.3■□□□□ 0.84
RC3H1Q5TC82 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 AC016694.1-201ENST00000434179 700 ntBASIC20.29■□□□□ 0.84
RC3H1Q5TC82 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 AC068587.10-201ENST00000641210 219 ntBASIC20.29■□□□□ 0.84
RC3H1Q5TC82 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 BNIP3P1-202ENST00000550043 1585 ntBASIC20.29■□□□□ 0.84
RC3H1Q5TC82 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RC3H1Q5TC82 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 C1QBPP1-201ENST00000400117 770 ntBASIC20.28■□□□□ 0.84
RC3H1Q5TC82 KRT18P64-201ENST00000434946 1219 ntBASIC20.28■□□□□ 0.84
RC3H1Q5TC82 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 EMC4-209ENST00000559421 497 ntTSL 2 BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 DUX4L45-201ENST00000566406 1057 ntBASIC20.28■□□□□ 0.84
RC3H1Q5TC82 AP001063.1-201ENST00000568332 529 ntBASIC20.28■□□□□ 0.84
RC3H1Q5TC82 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 AL049840.4-201ENST00000602422 811 ntBASIC20.28■□□□□ 0.84
RC3H1Q5TC82 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 AL139099.5-201ENST00000635274 300 ntBASIC20.28■□□□□ 0.84
RC3H1Q5TC82 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
RC3H1Q5TC82 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms