Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.29■□□□□ 0.04
RFX4Q33E94 PRAL-201ENST00000624952 3286 ntBASIC15.29■□□□□ 0.04
RFX4Q33E94 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.29■□□□□ 0.04
RFX4Q33E94 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.29■□□□□ 0.04
RFX4Q33E94 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.29■□□□□ 0.04
RFX4Q33E94 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
RFX4Q33E94 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.29■□□□□ 0.04
RFX4Q33E94 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
RFX4Q33E94 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.29■□□□□ 0.04
RFX4Q33E94 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC15.29■□□□□ 0.04
RFX4Q33E94 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
RFX4Q33E94 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.29■□□□□ 0.04
RFX4Q33E94 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC15.29■□□□□ 0.04
RFX4Q33E94 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC15.29■□□□□ 0.04
RFX4Q33E94 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC15.29■□□□□ 0.04
RFX4Q33E94 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC15.29■□□□□ 0.04
RFX4Q33E94 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
RFX4Q33E94 AL591684.3-201ENST00000605187 298 ntBASIC15.29■□□□□ 0.04
RFX4Q33E94 AL353135.1-201ENST00000606729 504 ntBASIC15.29■□□□□ 0.04
RFX4Q33E94 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
RFX4Q33E94 NPAP1P7-201ENST00000613027 823 ntBASIC15.29■□□□□ 0.04
RFX4Q33E94 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 AP000550.4-202ENST00000639755 178 ntBASIC15.29■□□□□ 0.04
RFX4Q33E94 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.29■□□□□ 0.04
RFX4Q33E94 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
RFX4Q33E94 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.29■□□□□ 0.04
RFX4Q33E94 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.29■□□□□ 0.04
RFX4Q33E94 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.29■□□□□ 0.04
RFX4Q33E94 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFX4Q33E94 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
RFX4Q33E94 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
RFX4Q33E94 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
RFX4Q33E94 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
RFX4Q33E94 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 MIR600HG-201ENST00000449175 5984 ntBASIC15.28■□□□□ 0.04
RFX4Q33E94 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
RFX4Q33E94 AP005117.1-201ENST00000584346 1413 ntBASIC15.28■□□□□ 0.04
RFX4Q33E94 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.28■□□□□ 0.04
RFX4Q33E94 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX4Q33E94 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX4Q33E94 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX4Q33E94 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.28■□□□□ 0.04
RFX4Q33E94 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX4Q33E94 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.28■□□□□ 0.04
RFX4Q33E94 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
RFX4Q33E94 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX4Q33E94 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 GPAA1P2-202ENST00000606848 1787 ntBASIC15.28■□□□□ 0.04
RFX4Q33E94 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 TMBIM7P-203ENST00000641617 1718 ntBASIC15.28■□□□□ 0.04
RFX4Q33E94 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.28■□□□□ 0.04
RFX4Q33E94 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
RFX4Q33E94 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
RFX4Q33E94 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFX4Q33E94 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.27■□□□□ 0.04
RFX4Q33E94 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.27■□□□□ 0.04
RFX4Q33E94 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.27■□□□□ 0.04
RFX4Q33E94 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.27■□□□□ 0.04
RFX4Q33E94 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.27■□□□□ 0.04
RFX4Q33E94 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms