Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.91■□□□□ 0.3
NEK3P51956 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.91■□□□□ 0.3
NEK3P51956 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.91■□□□□ 0.3
NEK3P51956 MPDU1-223ENST00000582151 728 ntBASIC16.91■□□□□ 0.3
NEK3P51956 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.91■□□□□ 0.3
NEK3P51956 AC099522.2-201ENST00000607001 744 ntBASIC16.91■□□□□ 0.3
NEK3P51956 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.91■□□□□ 0.3
NEK3P51956 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.91■□□□□ 0.3
NEK3P51956 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
NEK3P51956 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.91■□□□□ 0.3
NEK3P51956 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
NEK3P51956 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.91■□□□□ 0.3
NEK3P51956 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.9■□□□□ 0.3
NEK3P51956 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.9■□□□□ 0.3
NEK3P51956 AC131009.4-201ENST00000624048 1740 ntBASIC16.9■□□□□ 0.3
NEK3P51956 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
NEK3P51956 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
NEK3P51956 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
NEK3P51956 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
NEK3P51956 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.9■□□□□ 0.3
NEK3P51956 ADH5P3-201ENST00000433842 1137 ntBASIC16.9■□□□□ 0.3
NEK3P51956 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.9■□□□□ 0.3
NEK3P51956 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.9■□□□□ 0.3
NEK3P51956 FAM86C2P-203ENST00000528684 1004 ntBASIC16.9■□□□□ 0.3
NEK3P51956 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
NEK3P51956 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.9■□□□□ 0.3
NEK3P51956 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
NEK3P51956 AL513210.1-201ENST00000629608 234 ntBASIC16.9■□□□□ 0.3
NEK3P51956 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
NEK3P51956 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.9■□□□□ 0.3
NEK3P51956 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
NEK3P51956 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.9■□□□□ 0.3
NEK3P51956 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
NEK3P51956 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
NEK3P51956 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.9■□□□□ 0.3
NEK3P51956 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
NEK3P51956 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.9■□□□□ 0.3
NEK3P51956 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
NEK3P51956 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.89■□□□□ 0.3
NEK3P51956 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
NEK3P51956 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
NEK3P51956 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.89■□□□□ 0.3
NEK3P51956 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
NEK3P51956 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
NEK3P51956 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
NEK3P51956 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NEK3P51956 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.89■□□□□ 0.29
NEK3P51956 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NEK3P51956 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NEK3P51956 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NEK3P51956 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NEK3P51956 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NEK3P51956 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
NEK3P51956 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.89■□□□□ 0.29
NEK3P51956 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NEK3P51956 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
NEK3P51956 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NEK3P51956 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.89■□□□□ 0.29
NEK3P51956 PMS2P2-201ENST00000425039 1128 ntBASIC16.89■□□□□ 0.29
NEK3P51956 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.89■□□□□ 0.29
NEK3P51956 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NEK3P51956 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.89■□□□□ 0.29
NEK3P51956 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.89■□□□□ 0.29
NEK3P51956 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.89■□□□□ 0.29
NEK3P51956 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.89■□□□□ 0.29
NEK3P51956 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
NEK3P51956 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.89■□□□□ 0.29
NEK3P51956 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
NEK3P51956 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.89■□□□□ 0.29
NEK3P51956 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
NEK3P51956 AL009183.1-201ENST00000603760 355 ntBASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms