Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
SMARCA1P28370 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.68■□□□□ 0.58
SMARCA1P28370 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCA1P28370 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCA1P28370 AL136982.4-201ENST00000437689 1740 ntBASIC18.68■□□□□ 0.58
SMARCA1P28370 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCA1P28370 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SMARCA1P28370 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.68■□□□□ 0.58
SMARCA1P28370 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.68■□□□□ 0.58
SMARCA1P28370 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCA1P28370 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCA1P28370 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.68■□□□□ 0.58
SMARCA1P28370 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCA1P28370 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC18.68■□□□□ 0.58
SMARCA1P28370 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SMARCA1P28370 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SMARCA1P28370 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.68■□□□□ 0.58
SMARCA1P28370 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCA1P28370 CYP4F24P-201ENST00000586049 1580 ntBASIC18.68■□□□□ 0.58
SMARCA1P28370 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SMARCA1P28370 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCA1P28370 FO538757.1-201ENST00000623083 1397 ntBASIC18.68■□□□□ 0.58
SMARCA1P28370 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SMARCA1P28370 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SMARCA1P28370 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
SMARCA1P28370 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SMARCA1P28370 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.67■□□□□ 0.58
SMARCA1P28370 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.67■□□□□ 0.58
SMARCA1P28370 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.67■□□□□ 0.58
SMARCA1P28370 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.67■□□□□ 0.58
SMARCA1P28370 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.67■□□□□ 0.58
SMARCA1P28370 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SMARCA1P28370 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.67■□□□□ 0.58
SMARCA1P28370 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.67■□□□□ 0.58
SMARCA1P28370 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCA1P28370 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.66■□□□□ 0.58
SMARCA1P28370 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCA1P28370 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SMARCA1P28370 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCA1P28370 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.66■□□□□ 0.58
SMARCA1P28370 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.66■□□□□ 0.58
SMARCA1P28370 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SMARCA1P28370 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
SMARCA1P28370 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCA1P28370 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCA1P28370 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.66■□□□□ 0.58
SMARCA1P28370 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.66■□□□□ 0.58
SMARCA1P28370 FO393414.2-201ENST00000405153 598 ntBASIC18.66■□□□□ 0.58
SMARCA1P28370 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.66■□□□□ 0.58
SMARCA1P28370 RPL37AP1-201ENST00000412502 279 ntBASIC18.66■□□□□ 0.58
SMARCA1P28370 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SMARCA1P28370 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.66■□□□□ 0.58
SMARCA1P28370 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.66■□□□□ 0.58
SMARCA1P28370 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.66■□□□□ 0.58
SMARCA1P28370 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCA1P28370 AL390955.2-201ENST00000603032 514 ntBASIC18.66■□□□□ 0.58
SMARCA1P28370 AL589739.1-201ENST00000607720 493 ntBASIC18.66■□□□□ 0.58
SMARCA1P28370 AL138828.2-201ENST00000615812 383 ntBASIC18.66■□□□□ 0.58
SMARCA1P28370 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SMARCA1P28370 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCA1P28370 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.66■□□□□ 0.58
SMARCA1P28370 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SMARCA1P28370 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SMARCA1P28370 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.66■□□□□ 0.58
SMARCA1P28370 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCA1P28370 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCA1P28370 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SMARCA1P28370 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
SMARCA1P28370 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.65■□□□□ 0.58
SMARCA1P28370 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
SMARCA1P28370 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCA1P28370 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SMARCA1P28370 AL080243.2-201ENST00000418783 582 ntBASIC18.65■□□□□ 0.58
SMARCA1P28370 TREML5P-201ENST00000421694 576 ntBASIC18.65■□□□□ 0.58
SMARCA1P28370 MTND6P24-201ENST00000440466 518 ntBASIC18.65■□□□□ 0.58
SMARCA1P28370 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.65■□□□□ 0.58
SMARCA1P28370 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.65■□□□□ 0.58
SMARCA1P28370 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.65■□□□□ 0.58
SMARCA1P28370 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms