Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
MSH3P20585 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.32■□□□□ 0.2
MSH3P20585 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.31■□□□□ 0.2
MSH3P20585 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
MSH3P20585 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
MSH3P20585 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
MSH3P20585 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.31■□□□□ 0.2
MSH3P20585 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 KRT8P48-201ENST00000515599 1220 ntBASIC16.31■□□□□ 0.2
MSH3P20585 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.31■□□□□ 0.2
MSH3P20585 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
MSH3P20585 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.31■□□□□ 0.2
MSH3P20585 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.31■□□□□ 0.2
MSH3P20585 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.31■□□□□ 0.2
MSH3P20585 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 AL513523.2-202ENST00000427283 2040 ntBASIC16.31■□□□□ 0.2
MSH3P20585 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
MSH3P20585 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
MSH3P20585 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSH3P20585 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.3■□□□□ 0.2
MSH3P20585 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 AL391005.1-201ENST00000623953 2435 ntBASIC16.3■□□□□ 0.2
MSH3P20585 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.3■□□□□ 0.2
MSH3P20585 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.3■□□□□ 0.2
MSH3P20585 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.3■□□□□ 0.2
MSH3P20585 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
MSH3P20585 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 AC004967.1-201ENST00000453589 447 ntBASIC16.3■□□□□ 0.2
MSH3P20585 POU5F1P6-201ENST00000466990 990 ntBASIC16.3■□□□□ 0.2
MSH3P20585 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.3■□□□□ 0.2
MSH3P20585 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 AC079140.1-201ENST00000508039 487 ntBASIC16.3■□□□□ 0.2
MSH3P20585 PRYP6-201ENST00000514804 343 ntBASIC16.3■□□□□ 0.2
MSH3P20585 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.3■□□□□ 0.2
MSH3P20585 AC243562.1-201ENST00000560672 389 ntBASIC16.3■□□□□ 0.2
MSH3P20585 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.3■□□□□ 0.2
MSH3P20585 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.3■□□□□ 0.2
MSH3P20585 AC055717.3-201ENST00000622967 595 ntBASIC16.3■□□□□ 0.2
MSH3P20585 AC105339.1-204ENST00000636249 355 ntBASIC16.3■□□□□ 0.2
MSH3P20585 AC134684.3-201ENST00000641758 218 ntBASIC16.3■□□□□ 0.2
MSH3P20585 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.3■□□□□ 0.2
MSH3P20585 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSH3P20585 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms