Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 CDK4-206ENST00000549606 558 ntTSL 2 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 AC104794.3-201ENST00000566840 1248 ntBASIC19.19■□□□□ 0.66
HLA-DOAP06340 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC19.19■□□□□ 0.66
HLA-DOAP06340 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC19.18■□□□□ 0.66
HLA-DOAP06340 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.18■□□□□ 0.66
HLA-DOAP06340 AC007541.1-201ENST00000570282 1469 ntBASIC19.18■□□□□ 0.66
HLA-DOAP06340 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
HLA-DOAP06340 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.18■□□□□ 0.66
HLA-DOAP06340 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC19.18■□□□□ 0.66
HLA-DOAP06340 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC19.18■□□□□ 0.66
HLA-DOAP06340 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC19.18■□□□□ 0.66
HLA-DOAP06340 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC19.18■□□□□ 0.66
HLA-DOAP06340 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC19.18■□□□□ 0.66
HLA-DOAP06340 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC19.18■□□□□ 0.66
HLA-DOAP06340 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DOAP06340 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DOAP06340 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
HLA-DOAP06340 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DOAP06340 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DOAP06340 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
HLA-DOAP06340 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DOAP06340 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HLA-DOAP06340 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DOAP06340 GRAP-202ENST00000395635 834 ntTSL 2 BASIC19.17■□□□□ 0.66
HLA-DOAP06340 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DOAP06340 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
HLA-DOAP06340 SDHAP3-202ENST00000515467 728 ntBASIC19.17■□□□□ 0.66
HLA-DOAP06340 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DOAP06340 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC19.17■□□□□ 0.66
HLA-DOAP06340 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC19.17■□□□□ 0.66
HLA-DOAP06340 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DOAP06340 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HLA-DOAP06340 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DOAP06340 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HLA-DOAP06340 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.17■□□□□ 0.66
HLA-DOAP06340 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DOAP06340 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC19.17■□□□□ 0.66
HLA-DOAP06340 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DOAP06340 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DOAP06340 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DOAP06340 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DOAP06340 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.16■□□□□ 0.66
HLA-DOAP06340 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.16■□□□□ 0.66
HLA-DOAP06340 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DOAP06340 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.16■□□□□ 0.66
HLA-DOAP06340 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
HLA-DOAP06340 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DOAP06340 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DOAP06340 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DOAP06340 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DOAP06340 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DOAP06340 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DOAP06340 AL353779.1-201ENST00000434793 351 ntBASIC19.16■□□□□ 0.66
HLA-DOAP06340 AC114501.2-201ENST00000439631 535 ntBASIC19.16■□□□□ 0.66
HLA-DOAP06340 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC19.16■□□□□ 0.66
HLA-DOAP06340 GAPDHP21-201ENST00000450301 1010 ntBASIC19.16■□□□□ 0.66
HLA-DOAP06340 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC19.16■□□□□ 0.66
HLA-DOAP06340 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC19.16■□□□□ 0.66
HLA-DOAP06340 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms