Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
COL2A1P02458 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.81■□□□□ 0.6
COL2A1P02458 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL2A1P02458 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL2A1P02458 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
COL2A1P02458 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.81■□□□□ 0.6
COL2A1P02458 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL2A1P02458 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.81■□□□□ 0.6
COL2A1P02458 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
COL2A1P02458 KRT18P64-201ENST00000434946 1219 ntBASIC18.81■□□□□ 0.6
COL2A1P02458 PHKG1P2-201ENST00000457537 863 ntBASIC18.81■□□□□ 0.6
COL2A1P02458 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.81■□□□□ 0.6
COL2A1P02458 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.81■□□□□ 0.6
COL2A1P02458 AC000095.1-201ENST00000603208 874 ntBASIC18.81■□□□□ 0.6
COL2A1P02458 AL450472.2-201ENST00000603663 1156 ntBASIC18.81■□□□□ 0.6
COL2A1P02458 AC097359.3-201ENST00000603982 1210 ntBASIC18.81■□□□□ 0.6
COL2A1P02458 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL2A1P02458 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COL2A1P02458 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL2A1P02458 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.81■□□□□ 0.6
COL2A1P02458 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.81■□□□□ 0.6
COL2A1P02458 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL2A1P02458 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
COL2A1P02458 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.8■□□□□ 0.6
COL2A1P02458 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.8■□□□□ 0.6
COL2A1P02458 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.8■□□□□ 0.6
COL2A1P02458 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL2A1P02458 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC18.8■□□□□ 0.6
COL2A1P02458 HIST1H2BPS3-201ENST00000419683 341 ntBASIC18.8■□□□□ 0.6
COL2A1P02458 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC18.8■□□□□ 0.6
COL2A1P02458 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC18.8■□□□□ 0.6
COL2A1P02458 FAM86LP-201ENST00000478302 853 ntBASIC18.8■□□□□ 0.6
COL2A1P02458 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.8■□□□□ 0.6
COL2A1P02458 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.8■□□□□ 0.6
COL2A1P02458 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.8■□□□□ 0.6
COL2A1P02458 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.8■□□□□ 0.6
COL2A1P02458 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.8■□□□□ 0.6
COL2A1P02458 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
COL2A1P02458 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.8■□□□□ 0.6
COL2A1P02458 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL2A1P02458 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
COL2A1P02458 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
COL2A1P02458 INTS4P2-202ENST00000614726 2019 ntBASIC18.79■□□□□ 0.6
COL2A1P02458 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.79■□□□□ 0.6
COL2A1P02458 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
COL2A1P02458 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC18.79■□□□□ 0.6
COL2A1P02458 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.79■□□□□ 0.6
COL2A1P02458 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.79■□□□□ 0.6
COL2A1P02458 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.79■□□□□ 0.6
COL2A1P02458 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.79■□□□□ 0.6
COL2A1P02458 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.79■□□□□ 0.6
COL2A1P02458 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.79■□□□□ 0.6
COL2A1P02458 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.79■□□□□ 0.6
COL2A1P02458 AL512343.1-201ENST00000605837 169 ntBASIC18.79■□□□□ 0.6
COL2A1P02458 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.79■□□□□ 0.6
COL2A1P02458 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
COL2A1P02458 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
COL2A1P02458 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
COL2A1P02458 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 REXO1L1P-202ENST00000608646 1974 ntBASIC18.79■□□□□ 0.6
COL2A1P02458 AC134407.2-201ENST00000625089 1978 ntBASIC18.79■□□□□ 0.6
COL2A1P02458 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL2A1P02458 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL2A1P02458 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL2A1P02458 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL2A1P02458 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
COL2A1P02458 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
COL2A1P02458 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COL2A1P02458 MIR648-201ENST00000385046 94 ntBASIC18.78■□□□□ 0.6
COL2A1P02458 BOLA2P3-201ENST00000404566 256 ntBASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms