Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 MRPL20P1-201ENST00000400819 433 ntBASIC17.75■□□□□ 0.43
RNF40O75150 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.75■□□□□ 0.43
RNF40O75150 MKNK2P1-201ENST00000437526 628 ntBASIC17.75■□□□□ 0.43
RNF40O75150 CEND1P1-201ENST00000451006 455 ntBASIC17.75■□□□□ 0.43
RNF40O75150 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
RNF40O75150 CYMP-203ENST00000474680 1263 ntBASIC17.75■□□□□ 0.43
RNF40O75150 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.75■□□□□ 0.43
RNF40O75150 RFPL4AP1-201ENST00000530883 850 ntBASIC17.75■□□□□ 0.43
RNF40O75150 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.75■□□□□ 0.43
RNF40O75150 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.75■□□□□ 0.43
RNF40O75150 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF40O75150 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
RNF40O75150 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
RNF40O75150 AL139327.4-201ENST00000612362 153 ntBASIC17.75■□□□□ 0.43
RNF40O75150 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.75■□□□□ 0.43
RNF40O75150 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC17.75■□□□□ 0.43
RNF40O75150 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.74■□□□□ 0.43
RNF40O75150 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
RNF40O75150 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.74■□□□□ 0.43
RNF40O75150 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
RNF40O75150 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.74■□□□□ 0.43
RNF40O75150 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
RNF40O75150 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
RNF40O75150 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
RNF40O75150 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
RNF40O75150 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.74■□□□□ 0.43
RNF40O75150 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.74■□□□□ 0.43
RNF40O75150 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.74■□□□□ 0.43
RNF40O75150 AC124947.2-201ENST00000547118 1133 ntBASIC17.74■□□□□ 0.43
RNF40O75150 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.74■□□□□ 0.43
RNF40O75150 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.74■□□□□ 0.43
RNF40O75150 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.74■□□□□ 0.43
RNF40O75150 STK25P1-201ENST00000585406 838 ntBASIC17.74■□□□□ 0.43
RNF40O75150 AC010507.1-201ENST00000633895 436 ntBASIC17.74■□□□□ 0.43
RNF40O75150 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
RNF40O75150 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
RNF40O75150 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
RNF40O75150 ALOX12P2-203ENST00000570921 1945 ntBASIC17.74■□□□□ 0.43
RNF40O75150 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.74■□□□□ 0.43
RNF40O75150 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.74■□□□□ 0.43
RNF40O75150 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.74■□□□□ 0.43
RNF40O75150 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
RNF40O75150 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.74■□□□□ 0.43
RNF40O75150 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF40O75150 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
RNF40O75150 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.74■□□□□ 0.43
RNF40O75150 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.74■□□□□ 0.43
RNF40O75150 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC17.73■□□□□ 0.43
RNF40O75150 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC17.73■□□□□ 0.43
RNF40O75150 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.73■□□□□ 0.43
RNF40O75150 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 AC097637.2-201ENST00000624096 1997 ntBASIC17.73■□□□□ 0.43
RNF40O75150 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.73■□□□□ 0.43
RNF40O75150 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.73■□□□□ 0.43
RNF40O75150 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RNF40O75150 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms