Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.24■□□□□ 0.03
PRKNO60260 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
PRKNO60260 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.24■□□□□ 0.03
PRKNO60260 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.24■□□□□ 0.03
PRKNO60260 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.24■□□□□ 0.03
PRKNO60260 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
PRKNO60260 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.24■□□□□ 0.03
PRKNO60260 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.24■□□□□ 0.03
PRKNO60260 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.24■□□□□ 0.03
PRKNO60260 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.24■□□□□ 0.03
PRKNO60260 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.24■□□□□ 0.03
PRKNO60260 AC026150.2-201ENST00000564693 1156 ntBASIC15.24■□□□□ 0.03
PRKNO60260 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.24■□□□□ 0.03
PRKNO60260 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.24■□□□□ 0.03
PRKNO60260 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.24■□□□□ 0.03
PRKNO60260 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 AC020765.3-201ENST00000613051 740 ntBASIC15.24■□□□□ 0.03
PRKNO60260 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.24■□□□□ 0.03
PRKNO60260 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.24■□□□□ 0.03
PRKNO60260 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.24■□□□□ 0.03
PRKNO60260 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.24■□□□□ 0.03
PRKNO60260 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PRKNO60260 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKNO60260 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.23■□□□□ 0.03
PRKNO60260 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.23■□□□□ 0.03
PRKNO60260 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
PRKNO60260 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.23■□□□□ 0.03
PRKNO60260 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.23■□□□□ 0.03
PRKNO60260 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.23■□□□□ 0.03
PRKNO60260 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.23■□□□□ 0.03
PRKNO60260 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.23■□□□□ 0.03
PRKNO60260 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.23■□□□□ 0.03
PRKNO60260 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
PRKNO60260 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.23■□□□□ 0.03
PRKNO60260 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.23■□□□□ 0.03
PRKNO60260 AL645939.2-201ENST00000427340 991 ntBASIC15.23■□□□□ 0.03
PRKNO60260 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.23■□□□□ 0.03
PRKNO60260 RFPL4AP1-201ENST00000530883 850 ntBASIC15.23■□□□□ 0.03
PRKNO60260 ALG1L8P-201ENST00000533887 760 ntBASIC15.23■□□□□ 0.03
PRKNO60260 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.23■□□□□ 0.03
PRKNO60260 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
PRKNO60260 AC106028.4-201ENST00000614509 607 ntBASIC15.23■□□□□ 0.03
PRKNO60260 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.23■□□□□ 0.03
PRKNO60260 Z92544.3-201ENST00000624747 417 ntBASIC15.23■□□□□ 0.03
PRKNO60260 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.23■□□□□ 0.03
PRKNO60260 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 ME2P1-201ENST00000426028 1970 ntBASIC15.23■□□□□ 0.03
PRKNO60260 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PRKNO60260 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.23■□□□□ 0.03
PRKNO60260 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PRKNO60260 HYMAI-201ENST00000635591 3347 ntBASIC15.23■□□□□ 0.03
PRKNO60260 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKNO60260 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PRKNO60260 REXO1L8P-201ENST00000604378 1897 ntBASIC15.23■□□□□ 0.03
PRKNO60260 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.22■□□□□ 0.03
PRKNO60260 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.22■□□□□ 0.03
PRKNO60260 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PRKNO60260 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.22■□□□□ 0.03
PRKNO60260 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
PRKNO60260 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
PRKNO60260 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.22■□□□□ 0.03
PRKNO60260 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.22■□□□□ 0.03
PRKNO60260 AC093724.1-201ENST00000448659 1027 ntBASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms