Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
NPHP1O15259 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP1O15259 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
NPHP1O15259 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.58■□□□□ 0.88
NPHP1O15259 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.58■□□□□ 0.88
NPHP1O15259 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP1O15259 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP1O15259 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.57■□□□□ 0.88
NPHP1O15259 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
NPHP1O15259 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP1O15259 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP1O15259 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP1O15259 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC20.57■□□□□ 0.88
NPHP1O15259 KRT8P39-201ENST00000396270 1433 ntBASIC20.57■□□□□ 0.88
NPHP1O15259 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP1O15259 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP1O15259 RASL12-203ENST00000434605 982 ntTSL 2 BASIC20.57■□□□□ 0.88
NPHP1O15259 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC20.57■□□□□ 0.88
NPHP1O15259 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.57■□□□□ 0.88
NPHP1O15259 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC20.57■□□□□ 0.88
NPHP1O15259 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC20.57■□□□□ 0.88
NPHP1O15259 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC20.57■□□□□ 0.88
NPHP1O15259 AC124947.2-201ENST00000547118 1133 ntBASIC20.57■□□□□ 0.88
NPHP1O15259 AL512361.1-201ENST00000554200 418 ntBASIC20.57■□□□□ 0.88
NPHP1O15259 WASH4P-201ENST00000564273 1246 ntBASIC20.57■□□□□ 0.88
NPHP1O15259 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC20.57■□□□□ 0.88
NPHP1O15259 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
NPHP1O15259 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
NPHP1O15259 CHCHD2P3-201ENST00000603038 451 ntBASIC20.57■□□□□ 0.88
NPHP1O15259 AC026979.3-201ENST00000607315 403 ntBASIC20.57■□□□□ 0.88
NPHP1O15259 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP1O15259 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP1O15259 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.57■□□□□ 0.88
NPHP1O15259 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP1O15259 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC20.57■□□□□ 0.88
NPHP1O15259 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP1O15259 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC20.57■□□□□ 0.88
NPHP1O15259 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
NPHP1O15259 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP1O15259 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP1O15259 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP1O15259 CROCCP2-202ENST00000412962 2773 ntBASIC20.57■□□□□ 0.88
NPHP1O15259 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.56■□□□□ 0.88
NPHP1O15259 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC20.56■□□□□ 0.88
NPHP1O15259 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
NPHP1O15259 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.56■□□□□ 0.88
NPHP1O15259 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC20.56■□□□□ 0.88
NPHP1O15259 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
NPHP1O15259 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
NPHP1O15259 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC20.56■□□□□ 0.88
NPHP1O15259 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC20.56■□□□□ 0.88
NPHP1O15259 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC20.56■□□□□ 0.88
NPHP1O15259 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.56■□□□□ 0.88
NPHP1O15259 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC20.56■□□□□ 0.88
NPHP1O15259 FHL2-212ENST00000607522 759 ntTSL 2 BASIC20.56■□□□□ 0.88
NPHP1O15259 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC20.56■□□□□ 0.88
NPHP1O15259 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC20.56■□□□□ 0.88
NPHP1O15259 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC20.56■□□□□ 0.88
NPHP1O15259 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
NPHP1O15259 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
NPHP1O15259 AC092053.1-201ENST00000605787 1936 ntBASIC20.56■□□□□ 0.88
NPHP1O15259 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP1O15259 PC-204ENST00000524491 1714 ntTSL 2 BASIC20.56■□□□□ 0.88
NPHP1O15259 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.55■□□□□ 0.88
NPHP1O15259 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
NPHP1O15259 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC20.55■□□□□ 0.88
NPHP1O15259 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
NPHP1O15259 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC20.55■□□□□ 0.88
NPHP1O15259 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms