Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 FGF14-AS2-201ENST00000606448 1074 ntBASIC12.04□□□□□ -0.48
SMKR1H3BMG3 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 CNTNAP3P2-201ENST00000617175 3861 ntBASIC12.04□□□□□ -0.48
SMKR1H3BMG3 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 KRT18P22-201ENST00000402024 1347 ntBASIC12.04□□□□□ -0.48
SMKR1H3BMG3 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 AC139749.1-202ENST00000617529 3139 ntBASIC12.04□□□□□ -0.48
SMKR1H3BMG3 AC148477.5-201ENST00000625164 1645 ntBASIC12.04□□□□□ -0.48
SMKR1H3BMG3 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
SMKR1H3BMG3 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 AD001527.2-201ENST00000622994 785 ntBASIC12.03□□□□□ -0.48
SMKR1H3BMG3 AL031432.5-201ENST00000641059 760 ntBASIC12.03□□□□□ -0.48
SMKR1H3BMG3 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 CICP24-201ENST00000605464 2705 ntBASIC12.03□□□□□ -0.48
SMKR1H3BMG3 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 AC006486.2-201ENST00000624246 2199 ntBASIC12.03□□□□□ -0.48
SMKR1H3BMG3 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SMKR1H3BMG3 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC12.02□□□□□ -0.48
SMKR1H3BMG3 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.48
SMKR1H3BMG3 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
SMKR1H3BMG3 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
SMKR1H3BMG3 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
SMKR1H3BMG3 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
SMKR1H3BMG3 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
SMKR1H3BMG3 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
SMKR1H3BMG3 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
SMKR1H3BMG3 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
SMKR1H3BMG3 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.48
SMKR1H3BMG3 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
SMKR1H3BMG3 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
SMKR1H3BMG3 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
SMKR1H3BMG3 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
SMKR1H3BMG3 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
SMKR1H3BMG3 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC12.02□□□□□ -0.49
SMKR1H3BMG3 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
SMKR1H3BMG3 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
SMKR1H3BMG3 AC023908.3-201ENST00000564211 3047 ntBASIC12.02□□□□□ -0.49
SMKR1H3BMG3 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC12.02□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms