Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 AC018712.1-201ENST00000455767 687 ntBASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 PGM5P2-202ENST00000637225 1043 ntBASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC39Q9UFE4 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 AC013268.4-201ENST00000637413 2228 ntBASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 AC079781.3-201ENST00000449110 356 ntBASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 AC105339.3-201ENST00000560043 636 ntBASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 AC002310.6-201ENST00000624451 1377 ntBASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CCDC39Q9UFE4 AL596087.1-201ENST00000400979 1969 ntBASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 HNRNPDP1-201ENST00000439535 754 ntBASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 AC013467.2-201ENST00000605472 835 ntBASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC39Q9UFE4 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms