Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 FAM86GP-201ENST00000448322 971 ntBASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 AL512356.2-201ENST00000546955 174 ntBASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 AC026150.2-201ENST00000564693 1156 ntBASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
CLIP2Q9UDT6 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 MIR770-201ENST00000390219 98 ntBASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 AP002490.2-201ENST00000524791 560 ntBASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 AC069262.1-201ENST00000539058 672 ntBASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 AC006449.5-201ENST00000610658 2098 ntBASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CLIP2Q9UDT6 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 SPDYE14P-201ENST00000442619 822 ntBASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 ALG1L8P-201ENST00000533887 760 ntBASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 DUX4L27-201ENST00000554796 1261 ntBASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms