Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 UGT1A2P-201ENST00000454886 866 ntBASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 HLA-V-204ENST00000476601 1289 ntBASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 AL391256.1-201ENST00000443260 1855 ntBASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 MIR661-201ENST00000384842 89 ntBASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 TSSK5P-201ENST00000423978 907 ntBASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 IGHV3-42-201ENST00000520410 361 ntBASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 AL590560.3-201ENST00000623350 461 ntBASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAIPQ9BWF2 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 AL512652.2-201ENST00000625156 1716 ntBASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 AL645728.1-201ENST00000366221 2101 ntBASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAIPQ9BWF2 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 AC100757.3-201ENST00000622361 1406 ntBASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 AC236430.1-201ENST00000402231 743 ntBASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 AL353705.2-201ENST00000428243 662 ntBASIC17.91■□□□□ 0.46
TRAIPQ9BWF2 AL512638.1-201ENST00000457493 794 ntBASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms