Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPNE1Q99829 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPNE1Q99829 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.41■□□□□ 0.22
CPNE1Q99829 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPNE1Q99829 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPNE1Q99829 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.41■□□□□ 0.22
CPNE1Q99829 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CPNE1Q99829 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CPNE1Q99829 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CPNE1Q99829 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.41■□□□□ 0.22
CPNE1Q99829 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPNE1Q99829 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPNE1Q99829 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPNE1Q99829 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 AC092384.3-202ENST00000564646 2873 ntBASIC16.4■□□□□ 0.22
CPNE1Q99829 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CPNE1Q99829 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.4■□□□□ 0.22
CPNE1Q99829 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.4■□□□□ 0.22
CPNE1Q99829 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CPNE1Q99829 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CPNE1Q99829 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CPNE1Q99829 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.4■□□□□ 0.22
CPNE1Q99829 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.4■□□□□ 0.22
CPNE1Q99829 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.4■□□□□ 0.22
CPNE1Q99829 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.4■□□□□ 0.22
CPNE1Q99829 FAM215A-202ENST00000632077 792 ntBASIC16.4■□□□□ 0.22
CPNE1Q99829 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
CPNE1Q99829 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 AC104640.1-201ENST00000562617 2109 ntBASIC16.4■□□□□ 0.22
CPNE1Q99829 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.4■□□□□ 0.22
CPNE1Q99829 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE1Q99829 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.22
CPNE1Q99829 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
CPNE1Q99829 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.39■□□□□ 0.22
CPNE1Q99829 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.39■□□□□ 0.21
CPNE1Q99829 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE1Q99829 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CPNE1Q99829 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CPNE1Q99829 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.39■□□□□ 0.21
CPNE1Q99829 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE1Q99829 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.39■□□□□ 0.21
CPNE1Q99829 KRT18P56-201ENST00000507275 550 ntBASIC16.39■□□□□ 0.21
CPNE1Q99829 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.39■□□□□ 0.21
CPNE1Q99829 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.39■□□□□ 0.21
CPNE1Q99829 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE1Q99829 MIR4751-201ENST00000578027 74 ntBASIC16.39■□□□□ 0.21
CPNE1Q99829 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.39■□□□□ 0.21
CPNE1Q99829 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE1Q99829 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CPNE1Q99829 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.39■□□□□ 0.21
CPNE1Q99829 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE1Q99829 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.39■□□□□ 0.21
CPNE1Q99829 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.39■□□□□ 0.21
CPNE1Q99829 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE1Q99829 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.38■□□□□ 0.21
CPNE1Q99829 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CPNE1Q99829 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CPNE1Q99829 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.38■□□□□ 0.21
CPNE1Q99829 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CPNE1Q99829 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.38■□□□□ 0.21
CPNE1Q99829 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.38■□□□□ 0.21
CPNE1Q99829 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 AL513480.1-201ENST00000451731 511 ntBASIC16.38■□□□□ 0.21
CPNE1Q99829 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CPNE1Q99829 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.38■□□□□ 0.21
CPNE1Q99829 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CPNE1Q99829 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
CPNE1Q99829 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.38■□□□□ 0.21
CPNE1Q99829 AC148477.8-201ENST00000624298 468 ntBASIC16.38■□□□□ 0.21
CPNE1Q99829 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.38■□□□□ 0.21
CPNE1Q99829 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.38■□□□□ 0.21
CPNE1Q99829 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE1Q99829 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms