Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 AL122018.1-201ENST00000446607 2310 ntBASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.9■□□□□ 0.14
CLIP3Q96DZ5 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 UXT-AS1-201ENST00000590504 1525 ntBASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 AC079328.2-201ENST00000561241 3354 ntBASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 WASH6P-202ENST00000359512 1437 ntBASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 AC109322.1-201ENST00000524499 1264 ntBASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 AC009093.7-201ENST00000623853 1223 ntBASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 AP001094.4-201ENST00000579008 2176 ntBASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.89■□□□□ 0.13
CLIP3Q96DZ5 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 FAM86GP-201ENST00000448322 971 ntBASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLIP3Q96DZ5 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms