Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 AC091046.1-201ENST00000331871 207 ntBASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 AL355334.1-201ENST00000417713 215 ntBASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 PTPA-217ENST00000434095 870 ntTSL 2 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 MAGEA5-201ENST00000446757 942 ntBASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 RPL8-205ENST00000527914 551 ntTSL 3 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMC1BQ8NDV3 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.27■□□□□ 0.67
SMC1BQ8NDV3 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 SOCS2P1-201ENST00000417727 557 ntBASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 AP006547.1-201ENST00000563435 692 ntBASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 NAT9-222ENST00000583476 583 ntTSL 3 BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 AL158212.4-201ENST00000624062 1286 ntBASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.26■□□□□ 0.67
SMC1BQ8NDV3 AC134312.5-201ENST00000568031 1313 ntBASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 AC012441.1-201ENST00000446669 685 ntBASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 PFN2-215ENST00000497148 743 ntTSL 4 BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 AC005695.3-201ENST00000614522 232 ntBASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC1BQ8NDV3 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 CSH2-202ENST00000345366 598 ntTSL 5 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 FO393414.2-201ENST00000405153 598 ntBASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 IMP3P2-201ENST00000489760 475 ntBASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms