Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 KRT8P39-201ENST00000396270 1433 ntBASIC15.25■□□□□ 0.03
BEST3Q8N1M1 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 AL391256.1-201ENST00000443260 1855 ntBASIC15.25■□□□□ 0.03
BEST3Q8N1M1 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 PCDH8P1-201ENST00000428983 2773 ntBASIC15.24■□□□□ 0.03
BEST3Q8N1M1 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 AL096865.1-201ENST00000606796 927 ntBASIC15.24■□□□□ 0.03
BEST3Q8N1M1 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BEST3Q8N1M1 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 AL391005.1-201ENST00000623953 2435 ntBASIC15.23■□□□□ 0.03
BEST3Q8N1M1 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 PCDHB19P-201ENST00000570871 2371 ntBASIC15.23■□□□□ 0.03
BEST3Q8N1M1 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 AC055876.3-201ENST00000431496 288 ntBASIC15.23■□□□□ 0.03
BEST3Q8N1M1 AP002490.2-201ENST00000524791 560 ntBASIC15.23■□□□□ 0.03
BEST3Q8N1M1 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 AC140878.1-201ENST00000565277 250 ntBASIC15.23■□□□□ 0.03
BEST3Q8N1M1 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 AC073389.1-201ENST00000595595 795 ntBASIC15.23■□□□□ 0.03
BEST3Q8N1M1 AC138649.4-201ENST00000612222 287 ntBASIC15.23■□□□□ 0.03
BEST3Q8N1M1 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
BEST3Q8N1M1 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BEST3Q8N1M1 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms