Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.14■□□□□ 0.33
HDAC4P56524 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.14■□□□□ 0.33
HDAC4P56524 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.14■□□□□ 0.33
HDAC4P56524 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.14■□□□□ 0.33
HDAC4P56524 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.14■□□□□ 0.33
HDAC4P56524 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
HDAC4P56524 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.14■□□□□ 0.33
HDAC4P56524 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.14■□□□□ 0.33
HDAC4P56524 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.14■□□□□ 0.33
HDAC4P56524 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.14■□□□□ 0.33
HDAC4P56524 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.14■□□□□ 0.33
HDAC4P56524 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.14■□□□□ 0.33
HDAC4P56524 MTDHP5-201ENST00000598980 586 ntBASIC17.14■□□□□ 0.33
HDAC4P56524 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.14■□□□□ 0.33
HDAC4P56524 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.14■□□□□ 0.33
HDAC4P56524 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.14■□□□□ 0.33
HDAC4P56524 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.14■□□□□ 0.33
HDAC4P56524 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
HDAC4P56524 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.14■□□□□ 0.33
HDAC4P56524 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HDAC4P56524 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDAC4P56524 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HDAC4P56524 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HDAC4P56524 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC4P56524 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.13■□□□□ 0.33
HDAC4P56524 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC4P56524 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.13■□□□□ 0.33
HDAC4P56524 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
HDAC4P56524 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.13■□□□□ 0.33
HDAC4P56524 AC006449.6-201ENST00000612330 2296 ntBASIC17.13■□□□□ 0.33
HDAC4P56524 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.13■□□□□ 0.33
HDAC4P56524 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.13■□□□□ 0.33
HDAC4P56524 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC4P56524 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC4P56524 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC4P56524 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HDAC4P56524 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HDAC4P56524 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HDAC4P56524 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.13■□□□□ 0.33
HDAC4P56524 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.13■□□□□ 0.33
HDAC4P56524 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.13■□□□□ 0.33
HDAC4P56524 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC4P56524 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC4P56524 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
HDAC4P56524 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HDAC4P56524 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.13■□□□□ 0.33
HDAC4P56524 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC4P56524 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC4P56524 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.13■□□□□ 0.33
HDAC4P56524 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC4P56524 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.13■□□□□ 0.33
HDAC4P56524 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC4P56524 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC4P56524 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HDAC4P56524 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC4P56524 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
HDAC4P56524 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.13■□□□□ 0.33
HDAC4P56524 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
HDAC4P56524 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.12■□□□□ 0.33
HDAC4P56524 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.12■□□□□ 0.33
HDAC4P56524 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.12■□□□□ 0.33
HDAC4P56524 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 AL596087.1-201ENST00000400979 1969 ntBASIC17.12■□□□□ 0.33
HDAC4P56524 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
HDAC4P56524 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 AL671277.1-201ENST00000429656 993 ntBASIC17.12■□□□□ 0.33
HDAC4P56524 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.12■□□□□ 0.33
HDAC4P56524 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.12■□□□□ 0.33
HDAC4P56524 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.12■□□□□ 0.33
HDAC4P56524 AL135744.1-201ENST00000565098 629 ntBASIC17.12■□□□□ 0.33
HDAC4P56524 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms