Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.34■□□□□ 0.37
LIG3P49916 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC17.34■□□□□ 0.37
LIG3P49916 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.34■□□□□ 0.37
LIG3P49916 ELK2BP-201ENST00000415014 1224 ntBASIC17.34■□□□□ 0.37
LIG3P49916 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.34■□□□□ 0.37
LIG3P49916 AC136632.2-201ENST00000512891 861 ntBASIC17.34■□□□□ 0.37
LIG3P49916 RNA5SP415-201ENST00000517246 115 ntBASIC17.34■□□□□ 0.37
LIG3P49916 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.34■□□□□ 0.37
LIG3P49916 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.34■□□□□ 0.37
LIG3P49916 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.34■□□□□ 0.37
LIG3P49916 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.34■□□□□ 0.37
LIG3P49916 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.34■□□□□ 0.37
LIG3P49916 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 AC106730.1-201ENST00000566722 1090 ntBASIC17.34■□□□□ 0.37
LIG3P49916 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 AL139424.1-201ENST00000607572 797 ntBASIC17.34■□□□□ 0.37
LIG3P49916 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.34■□□□□ 0.37
LIG3P49916 AC005593.1-201ENST00000624894 515 ntBASIC17.34■□□□□ 0.37
LIG3P49916 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC17.34■□□□□ 0.37
LIG3P49916 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.34■□□□□ 0.37
LIG3P49916 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
LIG3P49916 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC17.34■□□□□ 0.37
LIG3P49916 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.34■□□□□ 0.37
LIG3P49916 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIG3P49916 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
LIG3P49916 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.37
LIG3P49916 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
LIG3P49916 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LIG3P49916 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.33■□□□□ 0.37
LIG3P49916 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIG3P49916 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.33■□□□□ 0.37
LIG3P49916 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
LIG3P49916 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIG3P49916 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.33■□□□□ 0.36
LIG3P49916 AC104109.2-201ENST00000602919 1418 ntBASIC17.33■□□□□ 0.36
LIG3P49916 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.33■□□□□ 0.36
LIG3P49916 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIG3P49916 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIG3P49916 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIG3P49916 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
LIG3P49916 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.33■□□□□ 0.36
LIG3P49916 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LIG3P49916 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LIG3P49916 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.33■□□□□ 0.36
LIG3P49916 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LIG3P49916 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIG3P49916 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
LIG3P49916 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LIG3P49916 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.33■□□□□ 0.36
LIG3P49916 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIG3P49916 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.33■□□□□ 0.36
LIG3P49916 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.33■□□□□ 0.36
LIG3P49916 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIG3P49916 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
LIG3P49916 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 ZNF259P1-201ENST00000407656 1365 ntBASIC17.32■□□□□ 0.36
LIG3P49916 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
LIG3P49916 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.32■□□□□ 0.36
LIG3P49916 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
LIG3P49916 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.32■□□□□ 0.36
LIG3P49916 UNC93B6-202ENST00000528242 690 ntBASIC17.32■□□□□ 0.36
LIG3P49916 AL353135.1-201ENST00000606729 504 ntBASIC17.32■□□□□ 0.36
LIG3P49916 PGM5P2-202ENST00000637225 1043 ntBASIC17.32■□□□□ 0.36
LIG3P49916 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.32■□□□□ 0.36
LIG3P49916 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIG3P49916 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms