Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.63■□□□□ 0.25
HADHAP40939 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
HADHAP40939 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HADHAP40939 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.63■□□□□ 0.25
HADHAP40939 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.63■□□□□ 0.25
HADHAP40939 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.63■□□□□ 0.25
HADHAP40939 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.63■□□□□ 0.25
HADHAP40939 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.63■□□□□ 0.25
HADHAP40939 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 KRT19P2-202ENST00000557173 1012 ntBASIC16.63■□□□□ 0.25
HADHAP40939 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.63■□□□□ 0.25
HADHAP40939 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.63■□□□□ 0.25
HADHAP40939 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.63■□□□□ 0.25
HADHAP40939 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.63■□□□□ 0.25
HADHAP40939 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HADHAP40939 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HADHAP40939 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HADHAP40939 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.62■□□□□ 0.25
HADHAP40939 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.62■□□□□ 0.25
HADHAP40939 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 AC005052.1-201ENST00000625181 2492 ntBASIC16.62■□□□□ 0.25
HADHAP40939 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
HADHAP40939 AL162727.3-201ENST00000635661 2787 ntBASIC16.62■□□□□ 0.25
HADHAP40939 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HADHAP40939 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.62■□□□□ 0.25
HADHAP40939 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.62■□□□□ 0.25
HADHAP40939 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.62■□□□□ 0.25
HADHAP40939 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
HADHAP40939 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.62■□□□□ 0.25
HADHAP40939 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.62■□□□□ 0.25
HADHAP40939 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.62■□□□□ 0.25
HADHAP40939 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.62■□□□□ 0.25
HADHAP40939 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.62■□□□□ 0.25
HADHAP40939 AC109635.5-201ENST00000533593 962 ntBASIC16.62■□□□□ 0.25
HADHAP40939 AL671883.3-201ENST00000603274 991 ntBASIC16.62■□□□□ 0.25
HADHAP40939 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.62■□□□□ 0.25
HADHAP40939 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
HADHAP40939 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.62■□□□□ 0.25
HADHAP40939 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.62■□□□□ 0.25
HADHAP40939 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.62■□□□□ 0.25
HADHAP40939 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 AC006449.6-201ENST00000612330 2296 ntBASIC16.62■□□□□ 0.25
HADHAP40939 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HADHAP40939 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HADHAP40939 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.62■□□□□ 0.25
HADHAP40939 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.61■□□□□ 0.25
HADHAP40939 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HADHAP40939 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HADHAP40939 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.61■□□□□ 0.25
HADHAP40939 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
HADHAP40939 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HADHAP40939 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HADHAP40939 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
HADHAP40939 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HADHAP40939 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.61■□□□□ 0.25
HADHAP40939 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.61■□□□□ 0.25
HADHAP40939 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
HADHAP40939 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HADHAP40939 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HADHAP40939 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HADHAP40939 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HADHAP40939 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HADHAP40939 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HADHAP40939 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.61■□□□□ 0.25
HADHAP40939 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HADHAP40939 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.61■□□□□ 0.25
HADHAP40939 AC140658.5-201ENST00000438532 169 ntBASIC16.61■□□□□ 0.25
HADHAP40939 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HADHAP40939 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HADHAP40939 PDPK2P-202ENST00000562415 1191 ntBASIC16.61■□□□□ 0.25
HADHAP40939 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms