Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.71■□□□□ 0.11
MSX2P35548 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSX2P35548 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSX2P35548 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.71■□□□□ 0.11
MSX2P35548 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSX2P35548 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.71■□□□□ 0.11
MSX2P35548 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.71■□□□□ 0.11
MSX2P35548 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.71■□□□□ 0.1
MSX2P35548 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
MSX2P35548 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
MSX2P35548 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.71■□□□□ 0.1
MSX2P35548 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.71■□□□□ 0.1
MSX2P35548 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.71■□□□□ 0.1
MSX2P35548 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
MSX2P35548 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.71■□□□□ 0.1
MSX2P35548 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
MSX2P35548 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
MSX2P35548 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.7■□□□□ 0.1
MSX2P35548 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.7■□□□□ 0.1
MSX2P35548 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.7■□□□□ 0.1
MSX2P35548 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.7■□□□□ 0.1
MSX2P35548 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 AC023908.3-201ENST00000564211 3047 ntBASIC15.7■□□□□ 0.1
MSX2P35548 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.7■□□□□ 0.1
MSX2P35548 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC15.7■□□□□ 0.1
MSX2P35548 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC15.7■□□□□ 0.1
MSX2P35548 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
MSX2P35548 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC15.7■□□□□ 0.1
MSX2P35548 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC15.7■□□□□ 0.1
MSX2P35548 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC15.7■□□□□ 0.1
MSX2P35548 KRT8P26-201ENST00000534154 1276 ntBASIC15.7■□□□□ 0.1
MSX2P35548 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
MSX2P35548 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
MSX2P35548 CICP13-201ENST00000422015 2789 ntBASIC15.7■□□□□ 0.1
MSX2P35548 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.7■□□□□ 0.1
MSX2P35548 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.7■□□□□ 0.1
MSX2P35548 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.7■□□□□ 0.1
MSX2P35548 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
MSX2P35548 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 AC138035.3-201ENST00000622706 2791 ntBASIC15.7■□□□□ 0.1
MSX2P35548 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
MSX2P35548 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX2P35548 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.69■□□□□ 0.1
MSX2P35548 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.69■□□□□ 0.1
MSX2P35548 LINC01144-201ENST00000626198 1710 ntBASIC15.69■□□□□ 0.1
MSX2P35548 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
MSX2P35548 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 CCS-201ENST00000310190 942 ntTSL 5 BASIC15.69■□□□□ 0.1
MSX2P35548 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC15.69■□□□□ 0.1
MSX2P35548 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.69■□□□□ 0.1
MSX2P35548 AL671277.2-201ENST00000458060 996 ntBASIC15.69■□□□□ 0.1
MSX2P35548 POU5F1P6-201ENST00000466990 990 ntBASIC15.69■□□□□ 0.1
MSX2P35548 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC15.69■□□□□ 0.1
MSX2P35548 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
MSX2P35548 MPDU1-223ENST00000582151 728 ntBASIC15.69■□□□□ 0.1
MSX2P35548 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC15.69■□□□□ 0.1
MSX2P35548 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC15.69■□□□□ 0.1
MSX2P35548 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
MSX2P35548 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC15.69■□□□□ 0.1
MSX2P35548 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
MSX2P35548 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.69■□□□□ 0.1
MSX2P35548 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC15.69■□□□□ 0.1
MSX2P35548 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.69■□□□□ 0.1
MSX2P35548 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.69■□□□□ 0.1
MSX2P35548 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.69■□□□□ 0.1
MSX2P35548 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
MSX2P35548 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms