Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A5P29400 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
COL4A5P29400 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A5P29400 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A5P29400 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A5P29400 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19.29■□□□□ 0.68
COL4A5P29400 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A5P29400 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A5P29400 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A5P29400 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A5P29400 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A5P29400 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC19.29■□□□□ 0.68
COL4A5P29400 CNN2P8-201ENST00000421872 913 ntBASIC19.29■□□□□ 0.68
COL4A5P29400 AC245100.5-201ENST00000452108 331 ntBASIC19.29■□□□□ 0.68
COL4A5P29400 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
COL4A5P29400 SLED1-202ENST00000512051 380 ntBASIC19.29■□□□□ 0.68
COL4A5P29400 HNRNPUP1-201ENST00000554987 333 ntBASIC19.29■□□□□ 0.68
COL4A5P29400 ACTG1P17-201ENST00000558391 1119 ntBASIC19.29■□□□□ 0.68
COL4A5P29400 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC19.29■□□□□ 0.68
COL4A5P29400 AC008687.7-202ENST00000637404 953 ntBASIC19.29■□□□□ 0.68
COL4A5P29400 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COL4A5P29400 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COL4A5P29400 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC19.28■□□□□ 0.68
COL4A5P29400 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL4A5P29400 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC19.28■□□□□ 0.68
COL4A5P29400 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COL4A5P29400 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC19.28■□□□□ 0.68
COL4A5P29400 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.28■□□□□ 0.68
COL4A5P29400 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 KRT8P13-201ENST00000463294 1010 ntBASIC19.28■□□□□ 0.68
COL4A5P29400 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC19.28■□□□□ 0.68
COL4A5P29400 RPL8-205ENST00000527914 551 ntTSL 3 BASIC19.28■□□□□ 0.68
COL4A5P29400 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL4A5P29400 METTL26-214ENST00000614890 801 ntTSL 3 BASIC19.28■□□□□ 0.68
COL4A5P29400 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC19.28■□□□□ 0.68
COL4A5P29400 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
COL4A5P29400 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A5P29400 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL4A5P29400 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COL4A5P29400 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC19.27■□□□□ 0.68
COL4A5P29400 CALR4P-201ENST00000431943 946 ntBASIC19.27■□□□□ 0.68
COL4A5P29400 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC19.27■□□□□ 0.68
COL4A5P29400 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC19.27■□□□□ 0.68
COL4A5P29400 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC19.27■□□□□ 0.68
COL4A5P29400 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC19.27■□□□□ 0.68
COL4A5P29400 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC19.27■□□□□ 0.68
COL4A5P29400 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC19.27■□□□□ 0.68
COL4A5P29400 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COL4A5P29400 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
COL4A5P29400 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.27■□□□□ 0.68
COL4A5P29400 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC19.27■□□□□ 0.68
COL4A5P29400 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A5P29400 PCDHB18P-201ENST00000524813 2368 ntBASIC19.27■□□□□ 0.67
COL4A5P29400 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC19.27■□□□□ 0.67
COL4A5P29400 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A5P29400 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A5P29400 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
COL4A5P29400 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A5P29400 AC092506.1-202ENST00000401022 528 ntBASIC19.27■□□□□ 0.67
COL4A5P29400 USP40-206ENST00000443711 628 ntTSL 2 BASIC19.27■□□□□ 0.67
COL4A5P29400 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC19.27■□□□□ 0.67
COL4A5P29400 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.67
COL4A5P29400 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC19.27■□□□□ 0.67
COL4A5P29400 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
COL4A5P29400 AC022137.2-201ENST00000503482 481 ntBASIC19.27■□□□□ 0.67
COL4A5P29400 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.67
COL4A5P29400 RETN-203ENST00000629642 400 ntTSL 5 BASIC19.27■□□□□ 0.67
COL4A5P29400 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC19.27■□□□□ 0.67
COL4A5P29400 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC19.27■□□□□ 0.67
COL4A5P29400 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
COL4A5P29400 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A5P29400 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms